Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00844 ATGATGCTTTATTTTCTGTTTTTACTTCCCTTTCTTTCACTCCTCTCCTCCGCCGCCGCCTGGATAAACGCTCACGCCACCTTCTACGGCGGCAGCGATGCTTCCGGCACAATGGGTGGAGCTTGTGGGTATGGAAATCTTTACAGTGAAGGATACGGGAGCAACACTGCGGCAATCAGCACTGCACTTTTCAACGATGGGTTGAGTTGTGGGAGTTGTTATGTGATTAAGTGCGTTAATGATCCGAAATGGTGCCTACCTGGCTCTGTTTTGGTCACTGCCACTAACTTCTGTCCCCCTAATAATGCTCTTCCTAATAACGCCGGTGGTTGGTGTAACCCTCCTCTCCATCACTTTGACCTCTCCCAGTCTGTTTTTCTCCGTATTGCTCAATACCACGCCGGTATCGTCCCCGTCCTCTATCGCAGGGCTCCATGTAAGAGGAAGGGAGGAGTAAGATTCACAATAAAGGGCCATTCATACTTCAACTTAGTGTTAATAACCAATGTGGGAGGCGCAGGGGATGTTCATGCTGTGTCCGTAAAAGGCCCTAGAAGTGGGTGGCAGCCAATGTCCAGAAACTGGGGTCAGAACTGGCAAAGCCATAACTATTTAGATGCCCAGCCCCTCTCTTTCAAGCTCACTACTAGCGACGGCCGTACTCTTATTTCCAACAATGTGGCTCCTGCTGGCTGGTCCTTTGGCCAGACCTTCGCCGGCTCCCAGTTTCGATGA 735 50.48 MMLYFLFLLPFLSLLSSAAAWINAHATFYGGSDASGTMGGACGYGNLYSEGYGSNTAAISTALFNDGLSCGSCYVIKCVNDPKWCLPGSVLVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQSVFLRIAQYHAGIVPVLYRRAPCKRKGGVRFTIKGHSYFNLVLITNVGGAGDVHAVSVKGPRSGWQPMSRNWGQNWQSHNYLDAQPLSFKLTTSDGRTLISNNVAPAGWSFGQTFAGSQFR* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7719916 7722353 - CsaV3_2G010600.1 Csa02g00844 518901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00844 244 Gene3D - 13 147 IPR036908 -
Csa02g00844 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 151 IPR007112 -
Csa02g00844 244 Pfam Lytic transglycolase 56 141 IPR009009 -
Csa02g00844 244 PRINTS Expansin/Lol pI family signature 20 35 IPR007118 GO:0005576
Csa02g00844 244 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Csa02g00844 244 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Csa02g00844 244 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Csa02g00844 244 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Csa02g00844 244 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Csa02g00844 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 240 IPR007117 -
Csa02g00844 244 SUPERFAMILY PHL pollen allergen 148 239 IPR036749 -
Csa02g00844 244 SMART dpbb_1 56 141 IPR007112 -
Csa02g00844 244 PANTHER EXPANSIN-A15 6 243 IPR002963 GO:0009664
Csa02g00844 244 PANTHER EXPANSIN 6 243 - -
Csa02g00844 244 SUPERFAMILY Barwin-like endoglucanases 20 169 IPR036908 -
Csa02g00844 244 Pfam Expansin C-terminal domain 152 229 IPR007117 -
Csa02g00844 244 Gene3D - 151 243 IPR036749 -
Csa02g00844 244 PRINTS Expansin signature 51 65 IPR002963 GO:0009664
Csa02g00844 244 PRINTS Expansin signature 78 89 IPR002963 GO:0009664
Csa02g00844 244 PRINTS Expansin signature 90 100 IPR002963 GO:0009664
Csa02g00844 244 PRINTS Expansin signature 109 126 IPR002963 GO:0009664
Csa02g00844 244 PRINTS Expansin signature 126 139 IPR002963 GO:0009664
Csa02g00844 244 PRINTS Expansin signature 150 162 IPR002963 GO:0009664
Csa02g00844 244 PRINTS Expansin signature 162 183 IPR002963 GO:0009664
Csa02g00844 244 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Csa02g00844 244 PRINTS Expansin signature 226 242 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00242 Csa-Chr1:1529037 Csa02g00844 Csa-Chr2:7719916 2.82E-135 dispersed
Csa01g00561 Csa-Chr1:3628264 Csa02g00844 Csa-Chr2:7719916 1.78E-98 dispersed
Csa02g00844 Csa-Chr2:7719916 Csa05g00892 Csa-Chr5:6920508 4.30E-129 dispersed
Csa02g00844 Csa-Chr2:7719916 Csa05g02468 Csa-Chr5:26468526 1.18E-144 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00844 - - csv:101202833 489.96