Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00846 ATGCAGAATCATCATCAGCAGCACATGAACTTGGTTTTGTCTACTGATGCAAAACCAAGGCTAAAATGGACTCATGACCTTCATCAAAGATTTGTTGAAGCTGTCAATCATCTTGGTGGAGCAGATAAAGCTACACCTAAGAGTTTGATGAGAGTTATGGGAATCACTGGCCTTAGTCTTTACCATCTCAAAAGCCATTTACAGAAATACAGATTGGGGAAAAGCCAGCAAGCCGAAACCAATGCTCAACTCAAACTAGAAGAGATGCAGAAAAAAGGTGGGCATATTGATGGTGAGGAAAACAAGGATAGAACTCAAAACCAAAACAAAACAGAGAACATGAAGATATCAGAAGCTCTTGAAATGCAATTACAAGTACAGAAGAGACTACAAGAACAAATAGAGGTACAAAAACATTTGCAGCTGAAAATCGAAGCACAAGGGAAGTATTTAAAGATAGTATTAAGAAAAGCACAAGAGACAATTGCAGGGTACGGATGTTGTTCTGAAGCACTTGAAGAAGCCAAAGCAGAGCTTTCTCAATTGGCTTCAATGGTGAGCTCTGGCTGTCAGAGCTCTTGTTTATCAGAATTGACTGACTCAACAGAACTTAATTTTAAAGGGATTGAAAGAGTTGGAAGAAGAATGTGTTCCATTGAAAGCTCTTTAACATCTTCAGAAACCTCAGAGGAAGCCCCAATCACGAAGAAGAGAAAAGGAAAAGAAAAAGAAGAGAGTAGCTCTGTTTGTGAGGAGGACAAGGAATTAAGAATGATGGACTTGAATGATACAGCAATTGGATTTGAATCAAAGTTGATTCAGTTTCTTTAA 831 38.39 MQNHHQQHMNLVLSTDAKPRLKWTHDLHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRLGKSQQAETNAQLKLEEMQKKGGHIDGEENKDRTQNQNKTENMKISEALEMQLQVQKRLQEQIEVQKHLQLKIEAQGKYLKIVLRKAQETIAGYGCCSEALEEAKAELSQLASMVSSGCQSSCLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEEAPITKKRKGKEKEESSSVCEEDKELRMMDLNDTAIGFESKLIQFL* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7783744 7785877 - CsaV3_2G010620.1 Csa02g00846 518903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00846 276 MobiDBLite consensus disorder prediction 231 252 - -
Csa02g00846 276 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Csa02g00846 276 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 18 73 IPR006447 GO:0003677
Csa02g00846 276 Pfam MYB-CC type transfactor, LHEQLE motif 114 161 IPR025756 -
Csa02g00846 276 Pfam Myb-like DNA-binding domain 20 71 IPR001005 -
Csa02g00846 276 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL8 6 253 - -
Csa02g00846 276 MobiDBLite consensus disorder prediction 220 252 - -
Csa02g00846 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Csa02g00846 276 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 253 IPR044848 GO:0003700
Csa02g00846 276 Gene3D - 17 75 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00846 - - - csv:101203068 496.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00846 Csa-Chr2:7783744 Csa03g04029 Csa-Chr3:35194253 4.95E-65 dispersed
Csa02g00846 Csa-Chr2:7783744 Csa07g01218 Csa-Chr7:11974425 2.50E-50 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g01095 . 12 262 G2-like Transcription Factor Family AT3G24120 60.5 1.6e-71 266.5
Csa06g03417 . 31 195 G2-like Transcription Factor Family AT3G24120 59.2 2.1e-44 176.4
Csa06g01145 CCT 22 195 G2-like Transcription Factor Family AT3G24120 57.4 3.1e-43 172.6
Csa07g01218 CCT 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Csa03g02731 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 7.8e-39 157.9
Csa03g01797 . 241 399 G2-like Transcription Factor Family AT5G16560 61.5 3.9e-41 166.0
Csa03g04154 CCT 1 161 G2-like Transcription Factor Family AT5G42630 59.0 1.9e-37 152.9
Csa06g00332 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 3.7e-51 198.7
Csa05g02583 . 19 258 G2-like Transcription Factor Family AT1G25550 52.0 3.5e-49 192.2
Csa04g01908 . 1 302 G2-like Transcription Factor Family AT5G05090 56.2 6.6e-74 274.2
Csa03g03685 . 1 287 G2-like Transcription Factor Family AT5G05090 54.7 1.5e-70 263.1
Csa03g01095 . 12 298 G2-like Transcription Factor Family AT4G13640 51.7 6.5e-54 208.0
Csa03g01095 . 12 262 G2-like Transcription Factor Family AT3G24120 60.5 1.6e-71 266.5
Csa06g03417 . 31 195 G2-like Transcription Factor Family AT3G24120 59.2 2.1e-44 176.4
Csa06g01145 CCT 22 195 G2-like Transcription Factor Family AT3G24120 57.4 3.1e-43 172.6
Csa07g01218 CCT 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Csa03g02731 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 7.8e-39 157.9
Csa02g00846 . 3 252 G2-like Transcription Factor Family AT1G69580 50.9 2.0e-51 199.9
Csa07g01218 CCT 1 382 G2-like Transcription Factor Family AT1G79430 54.2 3.2e-87 318.9
Csa06g01145 CCT 1 364 G2-like Transcription Factor Family AT1G79430 51.5 1.5e-76 283.5
Csa03g01095 . 39 198 G2-like Transcription Factor Family AT1G79430 63.0 3.2e-39 159.5
Csa06g03415 . 54 262 G2-like Transcription Factor Family AT2G01060 64.3 8.3e-52 200.7
Csa04g01908 . 1 302 G2-like Transcription Factor Family AT3G10760 62.2 2.9e-90 328.9
Csa03g03685 . 1 287 G2-like Transcription Factor Family AT3G10760 59.1 8.9e-84 307.4
Csa04g01908 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 1.3e-60 229.9
Csa03g03685 . 1 199 G2-like Transcription Factor Family AT2G40970 60.0 1.3e-58 223.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004564 2 2 1 2 1 1 2 0 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30893 PF00249 Myb_DNA-binding 2.70E-06 CL0123 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00846 Csa_Chr02 FPKM 2.05949 2.408257 4.68356 5.521844 3.854281 3.833872 4.998876 10.582306 10.928635 11.019588