Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00846 ATGCAGAATCATCATCAGCAGCACATGAACTTGGTTTTGTCTACTGATGCAAAACCAAGGCTAAAATGGACTCATGACCTTCATCAAAGATTTGTTGAAGCTGTCAATCATCTTGGTGGAGCAGATAAAGCTACACCTAAGAGTTTGATGAGAGTTATGGGAATCACTGGCCTTAGTCTTTACCATCTCAAAAGCCATTTACAGAAATACAGATTGGGGAAAAGCCAGCAAGCCGAAACCAATGCTCAACTCAAACTAGAAGAGATGCAGAAAAAAGGTGGGCATATTGATGGTGAGGAAAACAAGGATAGAACTCAAAACCAAAACAAAACAGAGAACATGAAGATATCAGAAGCTCTTGAAATGCAATTACAAGTACAGAAGAGACTACAAGAACAAATAGAGGTACAAAAACATTTGCAGCTGAAAATCGAAGCACAAGGGAAGTATTTAAAGATAGTATTAAGAAAAGCACAAGAGACAATTGCAGGGTACGGATGTTGTTCTGAAGCACTTGAAGAAGCCAAAGCAGAGCTTTCTCAATTGGCTTCAATGGTGAGCTCTGGCTGTCAGAGCTCTTGTTTATCAGAATTGACTGACTCAACAGAACTTAATTTTAAAGGGATTGAAAGAGTTGGAAGAAGAATGTGTTCCATTGAAAGCTCTTTAACATCTTCAGAAACCTCAGAGGAAGCCCCAATCACGAAGAAGAGAAAAGGAAAAGAAAAAGAAGAGAGTAGCTCTGTTTGTGAGGAGGACAAGGAATTAAGAATGATGGACTTGAATGATACAGCAATTGGATTTGAATCAAAGTTGATTCAGTTTCTTTAA 831 38.39 MQNHHQQHMNLVLSTDAKPRLKWTHDLHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRLGKSQQAETNAQLKLEEMQKKGGHIDGEENKDRTQNQNKTENMKISEALEMQLQVQKRLQEQIEVQKHLQLKIEAQGKYLKIVLRKAQETIAGYGCCSEALEEAKAELSQLASMVSSGCQSSCLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEEAPITKKRKGKEKEESSSVCEEDKELRMMDLNDTAIGFESKLIQFL* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7783744 7785877 - CsaV3_2G010620.1 Csa02g00846 518903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00846 276 MobiDBLite consensus disorder prediction 231 252 - -
Csa02g00846 276 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Csa02g00846 276 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 18 73 IPR006447 GO:0003677
Csa02g00846 276 Pfam MYB-CC type transfactor, LHEQLE motif 114 161 IPR025756 -
Csa02g00846 276 Pfam Myb-like DNA-binding domain 20 71 IPR001005 -
Csa02g00846 276 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL8 6 253 - -
Csa02g00846 276 MobiDBLite consensus disorder prediction 220 252 - -
Csa02g00846 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Csa02g00846 276 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 253 IPR044848 GO:0003700
Csa02g00846 276 Gene3D - 17 75 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00846 Csa-Chr2:7783744 Csa03g04029 Csa-Chr3:35194253 4.95E-65 dispersed
Csa02g00846 Csa-Chr2:7783744 Csa07g01218 Csa-Chr7:11974425 2.50E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30893 PF00249 Myb_DNA-binding 2.70E-06 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00846 - - csv:101203068 496.893