Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00853 ATGGAGCATGGAGGTGTTGTGTCGAAGGGGATGGCGTCAGACCCTTCAAGTTCGTACCAAAAAATAATAATAGTTGCAGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTACAGCTTTCATTGCTAACACCTTACGTCCAACAACTTGGAGTTTCACATACATGGTCCGCTTTCATATGGCTTTGCGGACCATTATCAGGACTTATTGTGCAACCCACTGTCGGGTACTACAGTGATCGCTGCACCTCTAGGTTTGGTCGTCGTCGGCCGTTCATTGTTGCTGGATCTACTTTTGTGGCAACTGCAGTTTTCCTCATTGGCTTTGCTGCAGACATTGGGCATGCAGTGGGTGATCCGCTTAACAAACCCACAAAACCAAGAGCTGTTGCCATCTTTGTGGTTGGATTTTGGGTTCTTGATGTTGCTAACAACATGCTCCAAGGCCCTTGTAGAGCTCTGTTGGCAGATATGTCATGTAACAACCACAAGAAGATGAGAATGGCCAATGGATTTTTCTCATTCTTCATGGGGGTAGGGAATGTTTTGGGGTACGCAGCTGGGTCCTATAACAAACTCTACAAATTCCTTCCCTTCACACTAACCAAAGCATGTGACAGTTACTGTGCCAACCTCAAAACATGCTTCTTGATCGACATTGTATTCCTTCTCCTCGTTACCACGTTCGCTGTGTTGATGGTGAGCGAGAACCAATTTGACCCATTGGAGATTGACGAAGAAGCAACACCCTTTTTCGGGAAATTGTTTGGAGCACTCAAGAAGTTGGAGAGGCCAATGTGGCTTTTGTTGCTGGTAACAGCCTTGAACTGGATCGGTTGGTTCCCATTTATCATGTACGATACTGACTGGATGGGTTTGGAAGTGTACGGAGGAAAGCCAAAGGGGAGTCCTGAAGAAGTCAAGTTCTATGACCTTGGTGTTCGTGCTGGGGCCCTTGGGTTGATGGTAAACTCATTTGTTTTGGGATTTTCAGCTTTGGGAATTGAGCCAATAAGTCGTATTTTAGGAGGCCTCAGATGGTGGTGGGGAATTGTTAACATTATATTTACAGTTTGCATGGGATCCACCGTCGTGGTTACAAAGGTTGCTGAGCGTTGGAGGTCCGTTAATGGTTTGCGTCCTCCTCCACTAAACGTCAGGGCAGGAGCATTTTCGATCTTTGCGATATTGGGTATTCCATTGTCAGTCACTTTTAGTGTTCCATTTGCGCTTGCGTCCATCTTTTCTTCAGAATCGGATGCGGGTCAAGGCCTCTCCTTGGGAATTCTCAACCTCTTCATTGTGATTCCACAGTTTATCGTATCCGCAGTTAGTGGGCCATTAGATGCTGCTTTCGGAGGAGGAAACTTACCCGCATTCGTAATGGGTGGAATTGCTTCTTTTGCAAGTGCAATGTGTGCAATGTTCGTCCTCCCGCGATCCACCACCTCAATCCGATGTCTCCTTAACAATGGGCGGTGGTCATTGATTCTTCCAACTTTATCAGATTTTCACCGTTCCTCTCATTATTTTTTGTCCATTTTCTCTACTCTTTTCTTTGTTAATTCTTTGTATGAGATAATAAACGTAGAATAA 1596 45.49 MEHGGVVSKGMASDPSSSYQKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIVAGSTFVATAVFLIGFAADIGHAVGDPLNKPTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSCNNHKKMRMANGFFSFFMGVGNVLGYAAGSYNKLYKFLPFTLTKACDSYCANLKTCFLIDIVFLLLVTTFAVLMVSENQFDPLEIDEEATPFFGKLFGALKKLERPMWLLLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPKGSPEEVKFYDLGVRAGALGLMVNSFVLGFSALGIEPISRILGGLRWWWGIVNIIFTVCMGSTVVVTKVAERWRSVNGLRPPPLNVRAGAFSIFAILGIPLSVTFSVPFALASIFSSESDAGQGLSLGILNLFIVIPQFIVSAVSGPLDAAFGGGNLPAFVMGGIASFASAMCAMFVLPRSTTSIRCLLNNGRWSLILPTLSDFHRSSHYFLSIFSTLFFVNSLYEIINVE* 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7858083 7859796 - CsaV3_2G010690.1 Csa02g00853 518910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00853 531 Pfam MFS/sugar transport protein 28 278 - -
Csa02g00853 531 PANTHER SUGAR TRANSPORTER 18 487 - -
Csa02g00853 531 CDD MFS_SLC45_SUC 31 476 - -
Csa02g00853 531 SUPERFAMILY MFS general substrate transporter 22 480 IPR036259 -
Csa02g00853 531 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 18 487 - -
Csa02g00853 531 TIGRFAM GPH_sucrose: sucrose/H+ symporter 19 482 IPR005989 GO:0005887|GO:0008515|GO:0015770
Csa02g00853 531 Gene3D MFS general substrate transporter like domains 16 480 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00853 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:116401998 954.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00853 Csa-Chr2:7858083 Csa02g02236 Csa-Chr2:20093960 1.63E-157 dispersed
Csa02g00853 Csa-Chr2:7858083 Csa02g00855 Csa-Chr2:7878090 0 proximal
Csa02g00853 Csa-Chr2:7858083 Csa02g00856 Csa-Chr2:7878961 2.13E-123 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT1G22710 63.0 7.5e-175 610.5
Csa02g02236 . 28 492 Sucrose Transporter Gene Family AT1G22710 52.0 1.0e-139 493.8
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G22710 65.0 1.8e-96 350.1
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G22710 52.0 3.0e-54 209.9
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT2G14670 64.1 8.5e-176 613.6
Csa02g02236 . 21 492 Sucrose Transporter Gene Family AT2G14670 51.6 1.3e-136 483.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT2G14670 65.9 4.2e-98 355.5
Csa02g00856 . 1 206 Sucrose Transporter Gene Family AT2G14670 54.1 1.9e-50 197.2
Csa02g00853 . 14 409 Sucrose Transporter Gene Family AT1G66570 62.1 2.0e-147 519.2
Csa02g02236 . 21 420 Sucrose Transporter Gene Family AT1G66570 50.4 7.3e-113 404.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G66570 64.7 9.6e-97 350.9
Csa05g01698 . 154 607 Sucrose Transporter Gene Family AT2G02860 70.9 4.6e-187 651.0
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT5G06170 61.3 3.7e-163 571.6
Csa02g02236 . 27 492 Sucrose Transporter Gene Family AT5G06170 50.4 2.4e-130 462.6
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT5G06170 65.1 6.7e-96 348.2
Csa02g00853 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.9 1.8e-173 605.9
Csa02g02236 . 27 492 Sucrose Transporter Gene Family AT5G43610 50.9 2.4e-133 472.6
Csa02g00855 . 17 264 Sucrose Transporter Gene Family AT5G43610 65.5 3.0e-96 349.4
Csa02g00856 . 1 206 Sucrose Transporter Gene Family AT5G43610 54.1 5.6e-50 195.7
Csa02g02236 . 14 499 Sucrose Transporter Gene Family AT1G09960 70.6 1.9e-202 702.2
Csa02g00853 . 8 481 Sucrose Transporter Gene Family AT1G09960 51.5 3.5e-132 468.8
Csa02g00855 . 8 231 Sucrose Transporter Gene Family AT1G09960 61.1 2.9e-78 289.7
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT1G71880 61.7 9.9e-167 583.6
Csa02g02236 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.4 1.4e-133 473.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G71880 61.5 4.0e-91 332.4
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G71880 54.5 7.8e-55 211.8
Csa02g00853 . 17 479 Sucrose Transporter Gene Family AT1G71890 60.7 1.6e-164 576.2
Csa02g00855 . 17 264 Sucrose Transporter Gene Family AT1G71890 62.3 1.8e-91 333.6
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G71890 50.4 6.8e-51 198.7
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT1G71880 61.7 9.9e-167 583.6
Csa02g02236 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.4 1.4e-133 473.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G71880 61.5 4.0e-91 332.4
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G71880 54.5 7.8e-55 211.8
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT1G22710 63.0 7.5e-175 610.5
Csa02g02236 . 28 492 Sucrose Transporter Gene Family AT1G22710 52.0 1.0e-139 493.8
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G22710 65.0 1.8e-96 350.1
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G22710 52.0 3.0e-54 209.9
Csa05g01698 . 154 607 Sucrose Transporter Gene Family AT2G02860 70.9 4.6e-187 651.0
Csa02g02236 . 14 499 Sucrose Transporter Gene Family AT1G09960 70.6 1.9e-202 702.2
Csa02g00853 . 8 481 Sucrose Transporter Gene Family AT1G09960 51.5 3.5e-132 468.8
Csa02g00855 . 8 231 Sucrose Transporter Gene Family AT1G09960 61.1 2.9e-78 289.7
Csa02g00853 . 17 479 Sucrose Transporter Gene Family AT1G71890 60.7 1.6e-164 576.2
Csa02g00855 . 17 264 Sucrose Transporter Gene Family AT1G71890 62.3 1.8e-91 333.6
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G71890 50.4 6.8e-51 198.7
Csa02g00853 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.9 1.8e-173 605.9
Csa02g02236 . 27 492 Sucrose Transporter Gene Family AT5G43610 50.9 2.4e-133 472.6
Csa02g00855 . 17 264 Sucrose Transporter Gene Family AT5G43610 65.5 3.0e-96 349.4
Csa02g00856 . 1 206 Sucrose Transporter Gene Family AT5G43610 54.1 5.6e-50 195.7
Csa02g00853 . 14 409 Sucrose Transporter Gene Family AT1G66570 62.1 2.0e-147 519.2
Csa02g02236 . 21 420 Sucrose Transporter Gene Family AT1G66570 50.4 7.3e-113 404.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G66570 64.7 9.6e-97 350.9
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT2G14670 64.1 8.5e-176 613.6
Csa02g02236 . 21 492 Sucrose Transporter Gene Family AT2G14670 51.6 1.3e-136 483.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT2G14670 65.9 4.2e-98 355.5
Csa02g00856 . 1 206 Sucrose Transporter Gene Family AT2G14670 54.1 1.9e-50 197.2
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT5G06170 61.3 3.7e-163 571.6
Csa02g02236 . 27 492 Sucrose Transporter Gene Family AT5G06170 50.4 2.4e-130 462.6
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT5G06170 65.1 6.7e-96 348.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00853 Csa_Chr02 FPKM 1.180815 1.327882 12.4685 12.355701 17.276535 16.244312 16.134817 3.607334 3.733191 3.549574