Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g00872 | ATGAGGACTGGAAACCAAAAGAGGAAGCTGAGGCTAAGTAAGATCTATTCATTTGCTTGTGGAAGAACATCATTGAAAGATGAAGACCATTCACAAATTGGGACGCCCGGGTTTTCAAGAGTGGTTTTCTGTAATGATCCTGATTGTTTGGAGTCTGGAATGCGTAATTATGTTGACAATTCCATCAGGTCTACAAAGTATACACCCATCAATTTTTTGCCCAAGTCCTTGTTTGAGCAGTTCAGGAGGGTGGCTAACTTTTACTTCTTGGTTGCTGGAATACTAGCCTTCACTCCTCTTGCTCCTTTTACCGCCGTTAGTGCAATTATCCCTCTTATTGCAGTCATTATCGCAACAATGATTAAAGAAGGTATTGAAGATTGGCGACGACAGTCACAGGATATTGAGGTGAATAACAGAAAGGTTAAGGTTCATCAAGGCAATGGAGTCTTTGATTCTACTGAATGGAAAACTTTGAGGGTCGGAGATATAGTGAAGGTTGAAAAGGATCAATACTTTCCTGCCGATCTTCTTTTGATTTCATCATGCTATGAGGATGGAATCTGTTACGTAGAAACAATGAACCTTGATGGGGAAACAAATCTGAAAGTAAAGCAAGCATTGGATGCAACTGCATTTGCAAATGAGGATTCTAACTTCCGTGATTTTAAGGCTACAATCAAATGTGAAGACCCAAATGCAAATCTTTATACCTTTGTTGGAAGCATGGACTTTAAAGAGCAACAATATCCACTTTCCCCACAAAATCTTCTCTTGAGAGACTCCAAACTTCGAAACACAGAATATATATATGGGGTTGTTGTCTTTACTGGTCAAGATTCAAAGGTTATTCAAAATTCTACTGATCCGCCTTCCAAGAGAAGCAAAGTTGAGAAGAAGATGGATAAAATCATATATCTACTGTTTGGCATTCTATTCGTTCTGGCATTTATTGGATCTATAGTCTTTGGTGTCGTGACTAAAGATGATCTGAAAAATGGAAGGAGTAAGAGATGGTATCTTAAACCCGAAGATTCTACTATTTTCTTTGATCCTGAGAATGCACCAGCTGCTGCAATTTTTCACTTTCTTACTGCACTGATGTTGTATAACTACTTTATCCCTATATCATTGTATGTGTCTATTGAGATTGTCAAAGTTCTTCAGAGTATCTTCATCAATCAAGACATACACATGTACTATGAAGAAGCTGACAAACCAGCACATGCCCGCACCTCCAATTTGAATGAGGAACTTGGTCAAGTTGACACTATACTCTCTGACAAGACTGGCACTTTGACCTGCAACTCAATGGAGTTTATCAAGTGTTCTGTGGCTGGAACAGCTTATGGCAGTGGTATCACTGAAACTGAGAGAGCCATGGAAGCCAGAAATGGTATGCCAATGCTTAATGGTAATGGCAATGGAAATATCTATAAGCACAATGAGGATGCTACAGATACAAATCCCTCTGTCAAAGGGTTCAATTTTAAGGACAAAAGGATTATGAATGGAAAATGGGTTAATGAACCTCATGCAGATGTCATCCAGAAGTTCTTCCGCCTCCTTGCAACTTGTCATACAGCTATTCCTGATGTGGATGTAAACACGGGAAAGGTTTCATATGAAGCTGAATCGCCAGATGAAGCAGCATTTGTAATTGCTGCCAGAGAAATTGGTTTTGAATTCTTTCAGAGGACACAGACAAGTATTTCAATTCGTGAATTGGATCCTAGGTCTGGAAGGAAGGTCGAAAGGTCATATAAGCTTTTAAATGTTTTGGAGTTTAATAGCGCACGAAAGAGGATGTCTGTCATAATTAGAGACGAAGAAGGGAAAATACTATTACTATGCAAAGGTGCTGACAGTGTAATGTTTGAGAGGCTTGCGAAGAATGCTAGCAAATTTGAAGAGAAAACAAAGGAGCATATCAATGAATATGCTGATGCAGGCCTACGGACCTTGGTACTTGCTTATCGTGAACTTGATGAGGTGGAATACAAGGAATTTGACAGGAAATTCTATGAAGCAAAGAATTCAGTTAGTGCAGAGAGGGAGTCAATTATTGATAAAGTAACAGATCGCATTGAAAGGAATTTAATTCTTCTTGGTTCTACAGCAGTAGAGGACAAGCTTCAAAATGGGGTCCCTGAATGCATAGACAAACTTGCTCAAGCTGGGATTAAGATCTGGGTTTTGACCGGGGACAAGATGGAGACTGCGATCAATATTGGTTTTGCCTGTAGTTTGCTCAGACAAGGAATGAAACAGATTATTATAACTCTGGATACACCAGAAATTCAAGCCTTAGAAAGGACGGGGGAGAAGGATATGATCACTAAGGCATCAAAAGATAGTATCGTCCACAAGATAACTCGGGCAAGATCTCAGCTCACTGCATCAAGTGGAAGCTCTGAGGCTTATGCATTGATAATTGATGGGAAATCACTTACTTATGCTCTAGAGGATGATGTGAAGAATGTATTCCTTGACCTTGCAATTGGATGTGCGTCCGTTATTTGTTGTCGCTCATCTCCAAAGCAAAAGGCAATGGTCACTAAGTTGGTTAAACTTGCCACGGGGAAAACAACATTAGCAATTGGTGATGGTGCAAATGATGTTGGAATGCTTCAAGAAGCAGATATTGGAGTTGGAATCAGTGGCGCCGAAGGGATGCAGGCGGTCATGTCAAGTGATATTGCAATTGCTCAGTTCAGATATTTGGAGCGTCTTTTACTTGTGCATGGACATTGGTGTTACAGGAGATTATCATCAATGATATGCTACTTTTTCTACAAGAATTTCACGTTCGGTTTTACACTTTTCTTATATGAGGCATACACTTCGTTCTCTGGACAACCTGCATATAACGACTGGTTTATGTCACTCTACAATGTCCTCTTCTCATCTCTGCCAGTTGTGGCCCTCGGGGTGTTTGACCAAGACGTTTCTGCAAGATACTGCCTCAAGTATCCTATGTTGTACCAACAAGGTGTGCAGAACGTTCTCTTCAGCTGGGTTAGGATCCTCGGCTGGATGTTTAATGGTCTGTGTAGTGCACTGATCATTTTCTTTTTCTGCACAAGTGGAATGGAGCATCAAGCATTTAATTCCGAGGGGAAAACTGTGGGTAGGGATGTTCTAGGAGCAACAATGCTATCATGTGTTGTTTGGGTTGTCAACTTGCAGATGGCACTCTCTGTTAGCTACTTCACTTTGATACAACATATTTTCATTTGGGCTTCAATCTTTATCTGGTACCTTTTTCTGATGATATATGGAGCCTTTCCTGCCAGCATTTCGACAAATGCATATCGTGTGTTCCTTGAAGCCCTTGCTCCTGCTGGGTCTTATTGGCTTCTGCTGATATTTGTGGTGATCTCTACTCTGACTCCATTCTTTGTATACTCAGCATTACAGTTGAATTTCTTTCCCATGTACCATGAAAAAATACAATGGATAAGGCACGATGGTAAGGGGCAGATAGACGATCCCGAGTTTGTCCATATGGTCAGGCAAAGCTCATTGAGACCAACAACTGTGGGCTTCACGGCTCGTTTGGCAGCCAAAATAAGAAAAGAAAAATCATAG | 3591 | 40.6 | MRTGNQKRKLRLSKIYSFACGRTSLKDEDHSQIGTPGFSRVVFCNDPDCLESGMRNYVDNSIRSTKYTPINFLPKSLFEQFRRVANFYFLVAGILAFTPLAPFTAVSAIIPLIAVIIATMIKEGIEDWRRQSQDIEVNNRKVKVHQGNGVFDSTEWKTLRVGDIVKVEKDQYFPADLLLISSCYEDGICYVETMNLDGETNLKVKQALDATAFANEDSNFRDFKATIKCEDPNANLYTFVGSMDFKEQQYPLSPQNLLLRDSKLRNTEYIYGVVVFTGQDSKVIQNSTDPPSKRSKVEKKMDKIIYLLFGILFVLAFIGSIVFGVVTKDDLKNGRSKRWYLKPEDSTIFFDPENAPAAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGSGITETERAMEARNGMPMLNGNGNGNIYKHNEDATDTNPSVKGFNFKDKRIMNGKWVNEPHADVIQKFFRLLATCHTAIPDVDVNTGKVSYEAESPDEAAFVIAAREIGFEFFQRTQTSISIRELDPRSGRKVERSYKLLNVLEFNSARKRMSVIIRDEEGKILLLCKGADSVMFERLAKNASKFEEKTKEHINEYADAGLRTLVLAYRELDEVEYKEFDRKFYEAKNSVSAERESIIDKVTDRIERNLILLGSTAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIITLDTPEIQALERTGEKDMITKASKDSIVHKITRARSQLTASSGSSEAYALIIDGKSLTYALEDDVKNVFLDLAIGCASVICCRSSPKQKAMVTKLVKLATGKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRLSSMICYFFYKNFTFGFTLFLYEAYTSFSGQPAYNDWFMSLYNVLFSSLPVVALGVFDQDVSARYCLKYPMLYQQGVQNVLFSWVRILGWMFNGLCSALIIFFFCTSGMEHQAFNSEGKTVGRDVLGATMLSCVVWVVNLQMALSVSYFTLIQHIFIWASIFIWYLFLMIYGAFPASISTNAYRVFLEALAPAGSYWLLLIFVVISTLTPFFVYSALQLNFFPMYHEKIQWIRHDGKGQIDDPEFVHMVRQSSLRPTTVGFTARLAAKIRKEKS* | 1197 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8123011 | 8133767 | + | CsaV3_2G010880.1 | Csa02g00872 | 518929 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g00872 | 1196 | Pfam | Cation transport ATPase (P-type) | 538 | 629 | - | - | |
Csa02g00872 | 1196 | Gene3D | - | 549 | 680 | IPR023299 | GO:0000166 | |
Csa02g00872 | 1196 | CDD | P-type_ATPase_APLT_Dnf-like | 59 | 1027 | - | - | |
Csa02g00872 | 1196 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 895 | 1145 | IPR032630 | - | |
Csa02g00872 | 1196 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 56 | 1144 | IPR023298 | - | |
Csa02g00872 | 1196 | Gene3D | - | 699 | 907 | IPR023214 | - | |
Csa02g00872 | 1196 | PRINTS | P-type cation-transporting ATPase superfamily signature | 426 | 440 | - | - | |
Csa02g00872 | 1196 | PRINTS | P-type cation-transporting ATPase superfamily signature | 753 | 763 | - | - | |
Csa02g00872 | 1196 | PRINTS | P-type cation-transporting ATPase superfamily signature | 867 | 886 | - | - | |
Csa02g00872 | 1196 | SUPERFAMILY | HAD-like | 421 | 922 | IPR036412 | - | |
Csa02g00872 | 1196 | Gene3D | - | 115 | 288 | - | - | |
Csa02g00872 | 1196 | SFLD | p-type atpase | 408 | 918 | IPR044492 | - | |
Csa02g00872 | 1196 | Pfam | E1-E2 ATPase | 138 | 380 | - | - | |
Csa02g00872 | 1196 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 428 | 434 | IPR018303 | - | |
Csa02g00872 | 1196 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE 9-RELATED | 5 | 1194 | - | - | |
Csa02g00872 | 1196 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 833 | 949 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa02g00872 | 1196 | Pfam | Phospholipid-translocating ATPase N-terminal | 42 | 108 | IPR032631 | - | |
Csa02g00872 | 1196 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 502 | 666 | IPR023299 | GO:0000166 | |
Csa02g00872 | 1196 | TIGRFAM | ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase | 57 | 1152 | IPR006539 | GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326 | |
Csa02g00872 | 1196 | SFLD | Haloacid Dehalogenase | 408 | 918 | - | - | |
Csa02g00872 | 1196 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 5 | 1194 | - | - | |
Csa02g00872 | 1196 | SUPERFAMILY | Calcium ATPase, transduction domain A | 141 | 285 | IPR008250 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00638 | Csa-Chr1:4052892 | Csa02g00872 | Csa-Chr2:8123011 | 0 | dispersed | |
Csa01g00639 | Csa-Chr1:4067249 | Csa02g00872 | Csa-Chr2:8123011 | 0 | dispersed | |
Csa02g00872 | Csa-Chr2:8123011 | Csa07g02379 | Csa-Chr7:21930097 | 0 | dispersed | |
Csa02g00872 | Csa-Chr2:8123011 | Csa05g02560 | Csa-Chr5:26977036 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g00872 | K01530 | - | csv:101205800 | 2372.82 |