Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00872 ATGAGGACTGGAAACCAAAAGAGGAAGCTGAGGCTAAGTAAGATCTATTCATTTGCTTGTGGAAGAACATCATTGAAAGATGAAGACCATTCACAAATTGGGACGCCCGGGTTTTCAAGAGTGGTTTTCTGTAATGATCCTGATTGTTTGGAGTCTGGAATGCGTAATTATGTTGACAATTCCATCAGGTCTACAAAGTATACACCCATCAATTTTTTGCCCAAGTCCTTGTTTGAGCAGTTCAGGAGGGTGGCTAACTTTTACTTCTTGGTTGCTGGAATACTAGCCTTCACTCCTCTTGCTCCTTTTACCGCCGTTAGTGCAATTATCCCTCTTATTGCAGTCATTATCGCAACAATGATTAAAGAAGGTATTGAAGATTGGCGACGACAGTCACAGGATATTGAGGTGAATAACAGAAAGGTTAAGGTTCATCAAGGCAATGGAGTCTTTGATTCTACTGAATGGAAAACTTTGAGGGTCGGAGATATAGTGAAGGTTGAAAAGGATCAATACTTTCCTGCCGATCTTCTTTTGATTTCATCATGCTATGAGGATGGAATCTGTTACGTAGAAACAATGAACCTTGATGGGGAAACAAATCTGAAAGTAAAGCAAGCATTGGATGCAACTGCATTTGCAAATGAGGATTCTAACTTCCGTGATTTTAAGGCTACAATCAAATGTGAAGACCCAAATGCAAATCTTTATACCTTTGTTGGAAGCATGGACTTTAAAGAGCAACAATATCCACTTTCCCCACAAAATCTTCTCTTGAGAGACTCCAAACTTCGAAACACAGAATATATATATGGGGTTGTTGTCTTTACTGGTCAAGATTCAAAGGTTATTCAAAATTCTACTGATCCGCCTTCCAAGAGAAGCAAAGTTGAGAAGAAGATGGATAAAATCATATATCTACTGTTTGGCATTCTATTCGTTCTGGCATTTATTGGATCTATAGTCTTTGGTGTCGTGACTAAAGATGATCTGAAAAATGGAAGGAGTAAGAGATGGTATCTTAAACCCGAAGATTCTACTATTTTCTTTGATCCTGAGAATGCACCAGCTGCTGCAATTTTTCACTTTCTTACTGCACTGATGTTGTATAACTACTTTATCCCTATATCATTGTATGTGTCTATTGAGATTGTCAAAGTTCTTCAGAGTATCTTCATCAATCAAGACATACACATGTACTATGAAGAAGCTGACAAACCAGCACATGCCCGCACCTCCAATTTGAATGAGGAACTTGGTCAAGTTGACACTATACTCTCTGACAAGACTGGCACTTTGACCTGCAACTCAATGGAGTTTATCAAGTGTTCTGTGGCTGGAACAGCTTATGGCAGTGGTATCACTGAAACTGAGAGAGCCATGGAAGCCAGAAATGGTATGCCAATGCTTAATGGTAATGGCAATGGAAATATCTATAAGCACAATGAGGATGCTACAGATACAAATCCCTCTGTCAAAGGGTTCAATTTTAAGGACAAAAGGATTATGAATGGAAAATGGGTTAATGAACCTCATGCAGATGTCATCCAGAAGTTCTTCCGCCTCCTTGCAACTTGTCATACAGCTATTCCTGATGTGGATGTAAACACGGGAAAGGTTTCATATGAAGCTGAATCGCCAGATGAAGCAGCATTTGTAATTGCTGCCAGAGAAATTGGTTTTGAATTCTTTCAGAGGACACAGACAAGTATTTCAATTCGTGAATTGGATCCTAGGTCTGGAAGGAAGGTCGAAAGGTCATATAAGCTTTTAAATGTTTTGGAGTTTAATAGCGCACGAAAGAGGATGTCTGTCATAATTAGAGACGAAGAAGGGAAAATACTATTACTATGCAAAGGTGCTGACAGTGTAATGTTTGAGAGGCTTGCGAAGAATGCTAGCAAATTTGAAGAGAAAACAAAGGAGCATATCAATGAATATGCTGATGCAGGCCTACGGACCTTGGTACTTGCTTATCGTGAACTTGATGAGGTGGAATACAAGGAATTTGACAGGAAATTCTATGAAGCAAAGAATTCAGTTAGTGCAGAGAGGGAGTCAATTATTGATAAAGTAACAGATCGCATTGAAAGGAATTTAATTCTTCTTGGTTCTACAGCAGTAGAGGACAAGCTTCAAAATGGGGTCCCTGAATGCATAGACAAACTTGCTCAAGCTGGGATTAAGATCTGGGTTTTGACCGGGGACAAGATGGAGACTGCGATCAATATTGGTTTTGCCTGTAGTTTGCTCAGACAAGGAATGAAACAGATTATTATAACTCTGGATACACCAGAAATTCAAGCCTTAGAAAGGACGGGGGAGAAGGATATGATCACTAAGGCATCAAAAGATAGTATCGTCCACAAGATAACTCGGGCAAGATCTCAGCTCACTGCATCAAGTGGAAGCTCTGAGGCTTATGCATTGATAATTGATGGGAAATCACTTACTTATGCTCTAGAGGATGATGTGAAGAATGTATTCCTTGACCTTGCAATTGGATGTGCGTCCGTTATTTGTTGTCGCTCATCTCCAAAGCAAAAGGCAATGGTCACTAAGTTGGTTAAACTTGCCACGGGGAAAACAACATTAGCAATTGGTGATGGTGCAAATGATGTTGGAATGCTTCAAGAAGCAGATATTGGAGTTGGAATCAGTGGCGCCGAAGGGATGCAGGCGGTCATGTCAAGTGATATTGCAATTGCTCAGTTCAGATATTTGGAGCGTCTTTTACTTGTGCATGGACATTGGTGTTACAGGAGATTATCATCAATGATATGCTACTTTTTCTACAAGAATTTCACGTTCGGTTTTACACTTTTCTTATATGAGGCATACACTTCGTTCTCTGGACAACCTGCATATAACGACTGGTTTATGTCACTCTACAATGTCCTCTTCTCATCTCTGCCAGTTGTGGCCCTCGGGGTGTTTGACCAAGACGTTTCTGCAAGATACTGCCTCAAGTATCCTATGTTGTACCAACAAGGTGTGCAGAACGTTCTCTTCAGCTGGGTTAGGATCCTCGGCTGGATGTTTAATGGTCTGTGTAGTGCACTGATCATTTTCTTTTTCTGCACAAGTGGAATGGAGCATCAAGCATTTAATTCCGAGGGGAAAACTGTGGGTAGGGATGTTCTAGGAGCAACAATGCTATCATGTGTTGTTTGGGTTGTCAACTTGCAGATGGCACTCTCTGTTAGCTACTTCACTTTGATACAACATATTTTCATTTGGGCTTCAATCTTTATCTGGTACCTTTTTCTGATGATATATGGAGCCTTTCCTGCCAGCATTTCGACAAATGCATATCGTGTGTTCCTTGAAGCCCTTGCTCCTGCTGGGTCTTATTGGCTTCTGCTGATATTTGTGGTGATCTCTACTCTGACTCCATTCTTTGTATACTCAGCATTACAGTTGAATTTCTTTCCCATGTACCATGAAAAAATACAATGGATAAGGCACGATGGTAAGGGGCAGATAGACGATCCCGAGTTTGTCCATATGGTCAGGCAAAGCTCATTGAGACCAACAACTGTGGGCTTCACGGCTCGTTTGGCAGCCAAAATAAGAAAAGAAAAATCATAG 3591 40.6 MRTGNQKRKLRLSKIYSFACGRTSLKDEDHSQIGTPGFSRVVFCNDPDCLESGMRNYVDNSIRSTKYTPINFLPKSLFEQFRRVANFYFLVAGILAFTPLAPFTAVSAIIPLIAVIIATMIKEGIEDWRRQSQDIEVNNRKVKVHQGNGVFDSTEWKTLRVGDIVKVEKDQYFPADLLLISSCYEDGICYVETMNLDGETNLKVKQALDATAFANEDSNFRDFKATIKCEDPNANLYTFVGSMDFKEQQYPLSPQNLLLRDSKLRNTEYIYGVVVFTGQDSKVIQNSTDPPSKRSKVEKKMDKIIYLLFGILFVLAFIGSIVFGVVTKDDLKNGRSKRWYLKPEDSTIFFDPENAPAAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGSGITETERAMEARNGMPMLNGNGNGNIYKHNEDATDTNPSVKGFNFKDKRIMNGKWVNEPHADVIQKFFRLLATCHTAIPDVDVNTGKVSYEAESPDEAAFVIAAREIGFEFFQRTQTSISIRELDPRSGRKVERSYKLLNVLEFNSARKRMSVIIRDEEGKILLLCKGADSVMFERLAKNASKFEEKTKEHINEYADAGLRTLVLAYRELDEVEYKEFDRKFYEAKNSVSAERESIIDKVTDRIERNLILLGSTAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIITLDTPEIQALERTGEKDMITKASKDSIVHKITRARSQLTASSGSSEAYALIIDGKSLTYALEDDVKNVFLDLAIGCASVICCRSSPKQKAMVTKLVKLATGKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRLSSMICYFFYKNFTFGFTLFLYEAYTSFSGQPAYNDWFMSLYNVLFSSLPVVALGVFDQDVSARYCLKYPMLYQQGVQNVLFSWVRILGWMFNGLCSALIIFFFCTSGMEHQAFNSEGKTVGRDVLGATMLSCVVWVVNLQMALSVSYFTLIQHIFIWASIFIWYLFLMIYGAFPASISTNAYRVFLEALAPAGSYWLLLIFVVISTLTPFFVYSALQLNFFPMYHEKIQWIRHDGKGQIDDPEFVHMVRQSSLRPTTVGFTARLAAKIRKEKS* 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8123011 8133767 + CsaV3_2G010880.1 Csa02g00872 518929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00872 1196 Pfam Cation transport ATPase (P-type) 538 629 - -
Csa02g00872 1196 Gene3D - 549 680 IPR023299 GO:0000166
Csa02g00872 1196 CDD P-type_ATPase_APLT_Dnf-like 59 1027 - -
Csa02g00872 1196 Pfam Phospholipid-translocating P-type ATPase C-terminal 895 1145 IPR032630 -
Csa02g00872 1196 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1144 IPR023298 -
Csa02g00872 1196 Gene3D - 699 907 IPR023214 -
Csa02g00872 1196 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Csa02g00872 1196 PRINTS P-type cation-transporting ATPase superfamily signature 753 763 - -
Csa02g00872 1196 PRINTS P-type cation-transporting ATPase superfamily signature 867 886 - -
Csa02g00872 1196 SUPERFAMILY HAD-like 421 922 IPR036412 -
Csa02g00872 1196 Gene3D - 115 288 - -
Csa02g00872 1196 SFLD p-type atpase 408 918 IPR044492 -
Csa02g00872 1196 Pfam E1-E2 ATPase 138 380 - -
Csa02g00872 1196 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Csa02g00872 1196 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 9-RELATED 5 1194 - -
Csa02g00872 1196 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 833 949 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g00872 1196 Pfam Phospholipid-translocating ATPase N-terminal 42 108 IPR032631 -
Csa02g00872 1196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 502 666 IPR023299 GO:0000166
Csa02g00872 1196 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 1152 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Csa02g00872 1196 SFLD Haloacid Dehalogenase 408 918 - -
Csa02g00872 1196 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 5 1194 - -
Csa02g00872 1196 SUPERFAMILY Calcium ATPase, transduction domain A 141 285 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00638 Csa-Chr1:4052892 Csa02g00872 Csa-Chr2:8123011 0 dispersed
Csa01g00639 Csa-Chr1:4067249 Csa02g00872 Csa-Chr2:8123011 0 dispersed
Csa02g00872 Csa-Chr2:8123011 Csa07g02379 Csa-Chr7:21930097 0 dispersed
Csa02g00872 Csa-Chr2:8123011 Csa05g02560 Csa-Chr5:26977036 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00872 K01530 - csv:101205800 2372.82