Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00896 ATGGTGAAGAAACGTGTGCCGGATTGGCTCAATAGCTCTCTTTGGTCCTCCGCTCCCTCTGTCGACGACGATCGCCTCCACCGCTACACTTCCGAGCCGGCAGCCACCACTTCCTCACCGGAACCTGTCGTTCAACCTCCTGTTCCGGTTCCTCCTCCGTCTGCGACCACCGCAGTCGTTAGAACGGAATCTCCTAAGTCTGATACTAGAGACTCCAGGGGTAATAACAATGTCACCAACGACGATAATGGCACTTCCTCAGGCCCTTCTGCTGAGGATGTATCTCGCCAAGCACAGCTTCTTGTTGAGCTGTCGAAGAAGATCATAAATCTGCGCGAATTGCGTAAAATTGCGTCTCAAGGCATACCGGATGGTCCAGGAATTCGTTCAACCGTCTGGAAACTTCTATTGGGTTATCTGCCACCAGATCGTGGGCTGTGGACGTCTGAGTTAGCTAAAAAGAGGTCTCAATACAAGCATTTTAAAGACGAGCTTTTGATGAATCCTTCCGAAATTTCAAGGAGGTCGGAGAAGGCCAAAAGTTACGAGCATGATGAAACGAACAAGGGTCCACTCTCAAGATCAGAAATAAGTCAAGAGGAACATCCTTTGAGTCTTGGGAAAACCAGCATCTGGAATCAGTACTTCCAGGACTCTGAGATTATAGAACAGATTGACCGGGATGTGAAGCGTACTCATCCAGATATGCACTTCTTCTCTGGGGACTCATCACTTGCAAAATCTAATCAGGAGGCTCTGAGAAACATCTTAATTGTATTTGCAAAGTTGAATCCAGGAATTAGATATGTTCAAGGGATGAATGAAATCTTAGCTCCTTTATTCTATGTATTTAGAAGTGATCCTGATGAGGACAATGCGGCATCTGCTGAAGCAGACACGTTCTTTTGTTTTGTTGAGTTATTGAGTGGATTTAGGGATCATTTCTGCCAGCAATTGGATAATAGTGTTGTGGGAATTCGTGCCACAATCACAAAGTTGTCTCAACTTCTGAAGGAGCATGATGAAGAGCTCTGGCGTCACCTTGAGATCACAACGAAAGTAAACCCCCAGTTTTATGCATTTAGGTGGATCACTCTGCTCTTGACCCAAGAGTTCAATTTTGCAGACAGCCTTCACATATGGGATACTATTTTGAGTGATCCTGAGGGTCCTCTGGAAACACTCCTCCGAATATGCTGCTCGATGTTGATTCTCATTAGACGACGCCTACTTGCAGGTGATTTTACAGCTAATCTCAAACTGCTCCAACACTATCCCCCGGCAAACATCAGTCATTTGCTCTACGTTGCAAACAAGTTGCGGAAACAACCTTCAATCTGA 1341 45.79 MVKKRVPDWLNSSLWSSAPSVDDDRLHRYTSEPAATTSSPEPVVQPPVPVPPPSATTAVVRTESPKSDTRDSRGNNNVTNDDNGTSSGPSAEDVSRQAQLLVELSKKIINLRELRKIASQGIPDGPGIRSTVWKLLLGYLPPDRGLWTSELAKKRSQYKHFKDELLMNPSEISRRSEKAKSYEHDETNKGPLSRSEISQEEHPLSLGKTSIWNQYFQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQEALRNILIVFAKLNPGIRYVQGMNEILAPLFYVFRSDPDEDNAASAEADTFFCFVELLSGFRDHFCQQLDNSVVGIRATITKLSQLLKEHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTILSDPEGPLETLLRICCSMLILIRRRLLAGDFTANLKLLQHYPPANISHLLYVANKLRKQPSI* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8344387 8352074 + CsaV3_2G011120.1 Csa02g00896 518953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00896 446 MobiDBLite consensus disorder prediction 1 94 - -
Csa02g00896 446 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 3 443 - -
Csa02g00896 446 MobiDBLite consensus disorder prediction 71 94 - -
Csa02g00896 446 SMART tbc_4 118 414 IPR000195 -
Csa02g00896 446 Gene3D - 324 445 - -
Csa02g00896 446 Gene3D - 92 146 - -
Csa02g00896 446 MobiDBLite consensus disorder prediction 169 191 - -
Csa02g00896 446 MobiDBLite consensus disorder prediction 40 54 - -
Csa02g00896 446 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 102 347 IPR035969 -
Csa02g00896 446 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 325 442 IPR035969 -
Csa02g00896 446 ProSiteProfiles TBC/rab GAP domain profile. 123 388 IPR000195 -
Csa02g00896 446 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 202 316 - -
Csa02g00896 446 MobiDBLite consensus disorder prediction 169 202 - -
Csa02g00896 446 Pfam Rab-GTPase-TBC domain 128 410 IPR000195 -
Csa02g00896 446 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 3 443 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00896 K24796 TBC1D13; TBC1 domain family member 13 - csv:101208456 861.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00663 Csa-Chr2:5072634 Csa02g00896 Csa-Chr2:8344387 5.13E-10 dispersed
Csa02g00896 Csa-Chr2:8344387 Csa04g00262 Csa-Chr4:1621470 6.64E-33 dispersed
Csa02g00896 Csa-Chr2:8344387 Csa05g00024 Csa-Chr5:110338 1.14E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g999 . Blo12g00111 Bda03g01130 . Bpe04g01073 . . . . . Cma06g01698 . Car06g01440 . . . . . . . . . . . . . . . . . . . . . . . Csa02g00896 . . . . . . . . . . . . . . . . Car17g00072 Cpe12g00072 . Bhi12g01464 . . . Hepe03g0386 . . . . . . . . . Lsi09g01112 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004668 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00896 Csa_Chr02 FPKM 44.49128 46.271015 30.194195 30.479261 34.021355 33.148048 35.684547 31.341476 31.624996 31.642902