Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00897 ATGGCAACTACTTTACGCTTGTATTTGACGTGCATACGGAACACTCTTGAGGCCGCCATGTGCCTTCAGAATTTTCCTTGTCAAGAAGTTGAAAGACACAACAAGCCGGAAGTTGAACTAAAGACCAGCTCAGAACTTCTTCTCAATCCTATCTTAATATGTAGAAATGAGTCAGAGAAATGTTTGATTGAGACATCTATAAACTCTCTCCGTATCAGTCTCAAGGTTAAGCAGACAGACGAACTAGAGAATATCCTAACTAAAAAGTTCCTTCGATTTCTGTCAATGAGGGCAGAAGCATTCCAGGTGTTGAGAAGAAAACCTGTACAGGGATACGACATTAGCTTTCTCATAACGAACTATCATTGTGAGGACATGCAGAAGCAAAAACTCATTGATTTTATTGTACAGTTTATGGAGGATATTGATAAAGAGATTAGTGAACTTAAAATGTCCGTGAACACTCGAGGAAGGCTTGTAGCAACAGAGTTTCTAAAGCAATTCATATGA 510 38.82 MATTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI* 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8353030 8361659 + CsaV3_2G011130.1 Csa02g00897 518954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00897 169 PANTHER ARP2/3 COMPLEX 20 KD SUBUNIT 1 168 IPR008384 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Csa02g00897 169 PIRSF ARPC4 1 169 IPR008384 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Csa02g00897 169 Pfam ARP2/3 complex 20 kDa subunit (ARPC4) 1 167 IPR008384 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Csa02g00897 169 Gene3D - 1 168 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Csa02g00897 169 PANTHER ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 4 1 168 - -
Csa02g00897 169 SUPERFAMILY Arp2/3 complex subunits 4 168 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00897 K05755 ARPC4; actin related protein 2/3 complex, subunit 4 - csv:101204204 333.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00897 Csa-Chr2:8353030 Csa03g01832 Csa-Chr3:14041651 1.38E-103 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g997 . . Bda03g01131 . Bpe04g01074 . Bma04g01171 . . Cmo17g00086 . . . . . . . . . . . . . . Cla06g00785 Cam06g0840 Cec06g0855 Cco06g0869 Clacu06g0843 Cmu06g0815 Cre06g1595 . . . . . Csa02g00897 . . . . . . . . . . . . . . Cma17g00079 . Car17g00073 Cpe12g00073 . Bhi12g01466 . . . . . Lcy13g0479 . . . . . . . Lsi09g01113 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009766 1 2 0 0 1 1 1 1 1 2 0 1 0 2 1 0 1 2 1 1 2 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00897 Csa_Chr02 FPKM 7.609691 8.731414 4.010515 3.871521 5.313579 4.61228 4.25148 9.355685 8.167627 7.900356