Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00898 ATGGGCGACCATTCAGGCAAGGCCGCCGGAGCCAACGCTTCAAAGCTTCCGATTCCAGGAAAGAGGAATATTCTCATCACCAGCGCTCTTCCATACGTCAATAACGTTCCTCACCTCGGAAACATCATTGGCTGTGTGTTGAGTGCTGATGTTTTTGCTCGATACTGTCGGCTTAGAGGTTATAACGCTATTTACATATGCGGAACCGATGAGTATGGAACGGCAACGGAGACAAAAGCAATGGAAGAGAAATGCTCTCCTAAAGAGATTTGTGACAAGTATCACGCAATTCACAAAGAAGTTTATAATTGGTTTGGTATTAGTTTCGATGAGTTTGGGCGCACATCATCGCCACAGCAGACGGAAGTTTGTCAAGCAATATTTGGCAAACTATTGGAGAACAATTGGCTTTCTGAGAACACAATGCAACAGCTATACTGTGATACGTGTGAGAGATTTTTAGCTGATCGGCTTGTTGAAGGCATATGTCCTACTCCAGGTTGCGAGTATGACTCTGCACGTGGTGATCAGTGTGAGAAGTGTGGGAAACTTCTAAATCCAACTGAATTGCAAGACCCTAGGTGCAAGGTCTGTCAAACAACCCCACGTATCCGTGACACAAACCACATGTTTCTTGAACTTCCTTTGCTGAGAGAGAAACTGGAAGAATATATCAACAAGATGTCTGTGGCTGGATCTTGGAGCCAAAATGCTATTCAAGCAACAAATGCTTGGCTTAAGGAAGGGTTGAAACCTCGGTGTATTACAAGAGATCTTAAGTGGGGGGTTCCCGTTCCACTTGAAAGGTTCAAGGACAAGGTTTTCTATGTCTGGTTTGATGCACCTATAGGATATGTCTCCATTACATCATGCTACACAAATGAATGGGAGAAGTGGTGGAAGAATCCAGAAAATGTAGAGCTTTTTCAATTTATGGGAAAGGATAACGTGCCTTTTCACACGGTTATGTTTCCTTCCACTCTTCTTGGAACTGGAGAAGACTGGACCTTAATGAAAACCATTAGTGTTACTGAATATTTAAACTATGAAGCAGGAAAATTTTCTAAAAGCAAGGGCATAGGAGTTTTTGGTAATGATGCAAAAGATACAAATATTCCTGTAGAAGTGTGGAGATACTACTTACTAGCAAATAGGCCTGAGGTGTCAGATACATTATTTACATGGGCTGATTTACAAGCAAAACTCAATGGTGAGTTGCTGAACAATTTGGGCAACTTCATTCATCGAGTTTTGAGCTTCATTGCCAAACCTTTAGGGCAGGGTTATGGTTCCATTATTCCTGATGTTCCTGACGTGGTATCTCATGAGTTAACATTGAGTTTGGCTGACAAAGTTGGTAAATACGTAGACCAATATATGGAATCAATGGAGAAGGTTAAACTAAAACAAGGTCTGAAAGCTGCAATGGCTATTTCAAGTGAGGGAAATATATATTTGCAAACAGCACAGTTCTGGAATCTTTACAAGGCGGACAAACCTTCCTGCGATATTGTTATGAGAACTTCAGCTGGACTAGTATATCTTCTAGCATGTTTATTAGAACCATTCATACCTTCTTTCTCACTGGAGGTGTTTAGGCAGCTGGATTTACCTCTGGAACGACATATTTCCCTTTGTGAAGAAAAGGGAGACATCGAGACAGTAAAACAACCTTGGAAGATCCTACCTTCTGGTCAAAAGATTGGCACACCAGAGCCATTGTTCAAAGAATTGAAAGACGAAGAAGTAGAACTATACAGAGACAAGTTTGCTGGAAGTCAGGCTCAACGCATTGTCAGAGCAGAAGCTGAAGCAGAAAAGCTTGCTGCTCAGCTTAAGAAAACTAACGTCTCAGGCGGTGGAAAAAAGCAACAGGCAAAATCTACAGGTGGGAAACAGAAAGCTGCTGTGGAACAAGAAATTACAATTACGAGACTGGATATACGTGTTGGGTTAATTACAAAAGCTCAGAAGCATCCTGATGCTGATTCCTTATACGTGGAAGAAATTGATGTGGGAGAATCGCAACCTCGAACTGTTGTGAGCGGATTAGTGAAGTACATACCCATTGAAGAGATGCAGAACCGGAAGGTGTGCGTTCTTTGCAACTTGAAGCCGGCAACCATGAGGGGCATTAAATCTCAAGCCATGGTTCTTGCTGCTTCCAATAGTGACCATACCAAGGTGGAATTAGTGGAGCCACCAAAAGAGGCGAAGGTTGGAGAAAGGGTAAAATTCGGAGGAATGGAAGGGGATGCGGACGATGTATTGAACCCAAAAAAGAAGGTATGGGAGACGCTGCAGGTTGATTTGTGTACCAACGGAGACCTAGTGGCGTGTTTTAAAGACATTCCCTTTACCACAACTGCGGGTATTTGCAAAGTTTCTTCCATTTCCAATGGTTCCATCAGGTAA 2415 42.53 MGDHSGKAAGANASKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCSPKEICDKYHAIHKEVYNWFGISFDEFGRTSSPQQTEVCQAIFGKLLENNWLSENTMQQLYCDTCERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELQDPRCKVCQTTPRIRDTNHMFLELPLLREKLEEYINKMSVAGSWSQNAIQATNAWLKEGLKPRCITRDLKWGVPVPLERFKDKVFYVWFDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLANRPEVSDTLFTWADLQAKLNGELLNNLGNFIHRVLSFIAKPLGQGYGSIIPDVPDVVSHELTLSLADKVGKYVDQYMESMEKVKLKQGLKAAMAISSEGNIYLQTAQFWNLYKADKPSCDIVMRTSAGLVYLLACLLEPFIPSFSLEVFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGQKIGTPEPLFKELKDEEVELYRDKFAGSQAQRIVRAEAEAEKLAAQLKKTNVSGGGKKQQAKSTGGKQKAAVEQEITITRLDIRVGLITKAQKHPDADSLYVEEIDVGESQPRTVVSGLVKYIPIEEMQNRKVCVLCNLKPATMRGIKSQAMVLAASNSDHTKVELVEPPKEAKVGERVKFGGMEGDADDVLNPKKKVWETLQVDLCTNGDLVACFKDIPFTTTAGICKVSSISNGSIR* 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8359606 8366890 - CsaV3_2G011140.1 Csa02g00898 518955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00898 804 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 10 804 - -
Csa02g00898 804 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 31 42 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Csa02g00898 804 Gene3D - 407 577 - -
Csa02g00898 804 CDD tRNA_bind_EMAP-II_like 641 744 - -
Csa02g00898 804 Gene3D - 641 804 IPR012340 -
Csa02g00898 804 Pfam tRNA synthetases class I (M) 24 418 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Csa02g00898 804 Pfam Putative tRNA binding domain 648 743 IPR002547 GO:0000049
Csa02g00898 804 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 159 195 IPR029038 -
Csa02g00898 804 TIGRFAM metG: methionine--tRNA ligase 24 557 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Csa02g00898 804 Coils Coil 598 618 - -
Csa02g00898 804 Gene3D - 159 195 IPR029038 -
Csa02g00898 804 Gene3D HUPs 23 406 IPR014729 -
Csa02g00898 804 Hamap Methionine--tRNA ligase [metG]. 22 589 IPR023458 GO:0004825
Csa02g00898 804 CDD MetRS_core 23 393 IPR033911 GO:0004825|GO:0006431
Csa02g00898 804 PRINTS Methionyl-tRNA synthetase signature 26 39 IPR033911 GO:0004825|GO:0006431
Csa02g00898 804 PRINTS Methionyl-tRNA synthetase signature 59 73 IPR033911 GO:0004825|GO:0006431
Csa02g00898 804 PRINTS Methionyl-tRNA synthetase signature 107 118 IPR033911 GO:0004825|GO:0006431
Csa02g00898 804 PRINTS Methionyl-tRNA synthetase signature 275 286 IPR033911 GO:0004825|GO:0006431
Csa02g00898 804 PRINTS Methionyl-tRNA synthetase signature 310 325 IPR033911 GO:0004825|GO:0006431
Csa02g00898 804 PRINTS Methionyl-tRNA synthetase signature 405 416 IPR033911 GO:0004825|GO:0006431
Csa02g00898 804 ProSiteProfiles tRNA-binding domain profile. 642 745 IPR002547 GO:0000049
Csa02g00898 804 PANTHER METHIONINE--TRNA LIGASE 10 804 IPR023458 GO:0004825
Csa02g00898 804 SUPERFAMILY Nucleic acid-binding proteins 643 802 IPR012340 -
Csa02g00898 804 CDD Anticodon_Ia_Met 402 535 IPR041872 -
Csa02g00898 804 Pfam Anticodon binding domain of methionyl tRNA ligase 447 594 IPR041872 -
Csa02g00898 804 SUPERFAMILY Nucleotidylyl transferase 21 403 - -
Csa02g00898 804 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 410 590 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00898 K01874 MARS, metG; methionyl-tRNA synthetase [EC:6.1.1.10] - csv:101208697 1619.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00898 Csa-Chr2:8359606 Csa05g00903 Csa-Chr5:6995230 1.92E-48 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g991 . Blo12g00110 Bda03g01132 . Bpe04g01075 . Bma04g01170 . . Cmo17g00087 . . . . . . . . . . . . . . Cla06g00784 Cam06g0838 Cec06g0853 Cco06g0867 Clacu06g0841 Cmu06g0813 Cre06g1593 . . . . . Csa02g00898 . . . . . . . . . . . . . . Cma17g00080 . Car17g00074 Cpe12g00074 . Bhi12g01467 . . . . . . . . . . . . . Lsi09g01114 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003190 3 1 3 3 3 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 3 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00898 Csa_Chr02 FPKM 10.262948 13.093893 4.881081 4.614607 9.597693 7.260537 10.98302 0.578252 1.11131 1.02494