Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00931 ATGGGTGGTGATGGAAAGCTCTTTACATTCGCTGAAGTCTCTCAGCACAACAATCCCAAGGACTGTTGGTTGATCATCAATGGCAAGGTTTACAATGTAACCGAGTTCTTGGAAGATCATCCCGGTGGTGACGAGGTGTTGTTGTCTGGCACAGGTAAGGATGCAACTGATGATTTTGAAGACGTGGGTCATAGTGAGAGCGCAAGAGAAACGATGAGCAAATACTACGTTGGAGAGATCGACATCTCGACACTCCCAGAACGGTTGACATACACAGGTCCAAAGCAGCCTCATTACAATCAGGATAAGACAACCGAGTTCATTATTAAGCTCCTCCAGTTCTTGGTTCCTCTCGCAATCTTGGGATTGGCGGTTGGTATCCGCTTTTACAACAAATCAAGCTGA 405 46.17 MGGDGKLFTFAEVSQHNNPKDCWLIINGKVYNVTEFLEDHPGGDEVLLSGTGKDATDDFEDVGHSESARETMSKYYVGEIDISTLPERLTYTGPKQPHYNQDKTTEFIIKLLQFLVPLAILGLAVGIRFYNKSS* 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8786198 8789620 - CsaV3_2G011470.1 Csa02g00931 518988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00931 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Csa02g00931 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Csa02g00931 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Csa02g00931 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Csa02g00931 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Csa02g00931 134 PANTHER CYTOCHROME B5-LIKE 1 132 - -
Csa02g00931 134 SMART Cyt_b5_2 8 81 IPR001199 -
Csa02g00931 134 Gene3D - 3 85 IPR036400 -
Csa02g00931 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Csa02g00931 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Csa02g00931 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 89 IPR036400 -
Csa02g00931 134 PANTHER CYTOCHROME B5 1 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00931 K23490 CYB5; cytochrome b5 - csv:101213506 278.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00931 Csa-Chr2:8786198 Csa03g02688 Csa-Chr3:25692835 3.40E-63 dispersed
Csa06g00093 Csa-Chr6:619820 Csa02g00931 Csa-Chr2:8786198 1.24E-11 dispersed
Csa02g00931 Csa-Chr2:8786198 Csa03g01102 Csa-Chr3:8715763 4.52E-76 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g00025 . 1 135 NADPH P450 reductases AT5G53560 77.8 2.6e-58 221.5
Csa03g01102 . 68 200 NADPH P450 reductases AT5G53560 69.2 6.2e-52 200.3
Csa02g00931 . 1 135 NADPH P450 reductases AT5G53560 66.7 9.9e-50 193.0
Csa03g02688 . 6 134 NADPH P450 reductases AT5G53560 64.3 1.9e-45 178.7
Csa03g01102 . 68 199 NADPH P450 reductases AT5G48810 64.9 5.6e-48 187.2
Csa02g00931 . 1 134 NADPH P450 reductases AT5G48810 61.8 1.8e-46 182.2
Csa05g00025 . 1 134 NADPH P450 reductases AT5G48810 60.3 4.5e-45 177.6
Csa03g02688 . 1 132 NADPH P450 reductases AT5G48810 62.2 7.6e-45 176.8
Csa03g01102 . 89 202 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Csa02g00931 . 13 135 NADPH P450 reductases AT2G32720 72.7 2.1e-47 185.3
Csa03g02688 . 21 132 NADPH P450 reductases AT2G32720 70.5 6.4e-41 163.7
Csa05g00025 . 22 133 NADPH P450 reductases AT2G32720 65.2 2.1e-39 158.7
Csa06g02086 . 1 130 NADPH P450 reductases AT1G26340 55.2 2.3e-38 155.2
Csa04g01877 . 2 282 NADPH P450 reductases AT5G17770 82.2 4.3e-132 467.6
Csa03g03663 CCT 2 281 NADPH P450 reductases AT5G17770 77.5 1.3e-125 446.0
Csa04g01228 . 6 279 NADPH P450 reductases AT5G17770 75.2 1.0e-117 419.9
Csa05g00025 . 1 135 NADPH P450 reductases AT5G53560 77.8 2.6e-58 221.5
Csa03g01102 . 68 200 NADPH P450 reductases AT5G53560 69.2 6.2e-52 200.3
Csa02g00931 . 1 135 NADPH P450 reductases AT5G53560 66.7 9.9e-50 193.0
Csa03g02688 . 6 134 NADPH P450 reductases AT5G53560 64.3 1.9e-45 178.7
Csa03g01102 . 68 199 NADPH P450 reductases AT5G48810 64.9 5.6e-48 187.2
Csa02g00931 . 1 134 NADPH P450 reductases AT5G48810 61.8 1.8e-46 182.2
Csa05g00025 . 1 134 NADPH P450 reductases AT5G48810 60.3 4.5e-45 177.6
Csa03g02688 . 1 132 NADPH P450 reductases AT5G48810 62.2 7.6e-45 176.8
Csa03g01102 . 89 202 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Csa02g00931 . 13 135 NADPH P450 reductases AT2G32720 72.7 2.1e-47 185.3
Csa03g02688 . 21 132 NADPH P450 reductases AT2G32720 70.5 6.4e-41 163.7
Csa05g00025 . 22 133 NADPH P450 reductases AT2G32720 65.2 2.1e-39 158.7
Csa06g02086 . 1 130 NADPH P450 reductases AT1G26340 55.2 2.3e-38 155.2
Csa04g01877 . 2 282 NADPH P450 reductases AT5G17770 82.2 4.3e-132 467.6
Csa03g03663 CCT 2 281 NADPH P450 reductases AT5G17770 77.5 1.3e-125 446.0
Csa04g01228 . 6 279 NADPH P450 reductases AT5G17770 75.2 1.0e-117 419.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00931 Csa_Chr02 FPKM 12.771438 14.001679 13.685217 12.940142 8.967607 8.047517 9.239998 19.071829 17.535738 18.600416