Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00934 ATGTGGATTATTATTCGTGGGATTATTCTTGTTTTGATGATGATGATATTTGTAAGAGGGAATGAAGGTGAACCTTATAGAAGAGTAGGAAGTAAGAAATTTGCATGGAAGACTTTAATTGTTGACAAGAAAGGCCATGGAAATTTCTCTACTATTCAAGCTGCCATTGATTCTGTTCCTTCTAATAATCGATTTTGGGTCTCCATTCATATTCGACCTGGTCTTTACAGAGAGAAGGTGAAGATTCCATATGATAAACCATATATAATTTTGAAAGGACATAGAAAAAGAAGAACAAAGGTTGTTTGGGACGATCATCTCACTGTTGCTCAAAGCCCTACTTTCACTTCTTCAGCTGATAATATTGTCGTCAAATCCATCTCTTTTGTGAATTCCTATAATTATCCATGGAAAAATGGAAATCCAAGAGTCCCAGCAGTGGCAGCAATGATCACAGGCGACAAGTCGTCTTTCTATAGATGTGGTTTCTATGGAGTTCAAGACACATTGTGGGATAATCAAGGACGACATTACTATCATCGTTGCACCATTCAAGGAGCTGTCGACTTTATTTTTGGAGCTGCTCAGTCCATTTTTCAGGGATGTTCAATATCAGTGGTTGGAGAAGCACTTCTTCCATACGGGTCTACAAGCTTCATAACAGCACAAGGAAGAACAAATCCAAATGATGCAAATGGTTTTGTATTCAAAGAATGCAATGTGTTTGGGAGTGGGTCAGCATACTTAGGAAGGCCATGGAGGGCTTATTCAAGAGTTATCTTTCACAACTCTAACTTCTCCAACATCATAAACCCTAATGGTTGGGATCCTTGGCAGTTTAAAAAGAAATTTAAGAACAAAGGAATAGAAGTTGTTGAATCTAAGTTTAGGAACCATTTGACATACGTAGAAAACGATTGTTATGGACCAGGTTCTGACATCTCAGGTCGTGTATCATGGGAAAAGAAGCTAAGTTGGAAAGAAATAAAAAAACTAATCAGTATGAATTTTATCGACGATGAAGAATGCAGAATTCAGTTGGATTTGGTTTTTTGGATTTTGAACGTTGAAATTGAAATGTCATCTACAAAACGTCAGCCATTTTGTACGATTTCCTAA 1119 37.09 MWIIIRGIILVLMMMIFVRGNEGEPYRRVGSKKFAWKTLIVDKKGHGNFSTIQAAIDSVPSNNRFWVSIHIRPGLYREKVKIPYDKPYIILKGHRKRRTKVVWDDHLTVAQSPTFTSSADNIVVKSISFVNSYNYPWKNGNPRVPAVAAMITGDKSSFYRCGFYGVQDTLWDNQGRHYYHRCTIQGAVDFIFGAAQSIFQGCSISVVGEALLPYGSTSFITAQGRTNPNDANGFVFKECNVFGSGSAYLGRPWRAYSRVIFHNSNFSNIINPNGWDPWQFKKKFKNKGIEVVESKFRNHLTYVENDCYGPGSDISGRVSWEKKLSWKEIKKLISMNFIDDEECRIQLDLVFWILNVEIEMSSTKRQPFCTIS* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8812145 8817260 + CsaV3_2G011500.1 Csa02g00934 518991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00934 372 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 3 342 - -
Csa02g00934 372 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
Csa02g00934 372 PANTHER PECTINESTERASE 10-RELATED 3 342 - -
Csa02g00934 372 Gene3D - 35 348 IPR012334 -
Csa02g00934 372 Pfam Pectinesterase 39 340 IPR000070 GO:0030599|GO:0042545
Csa02g00934 372 SUPERFAMILY Pectin lyase-like 37 341 IPR011050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00934 - - - csv:101205421 661.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00934 Csa-Chr2:8812145 Csa03g02455 Csa-Chr3:22768564 7.36E-91 dispersed
Csa02g00934 Csa-Chr2:8812145 Csa02g02065 Csa-Chr2:18904116 5.64E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g886 . . . . . . . . . Cmo17g00108 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa02g00934 . . . . . . . . . . . . . . . . Car17g00093 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011364 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00934 Csa_Chr02 FPKM 11.908695 11.142103 18.554646 19.015675 12.756313 10.806939 11.487957 14.46602 16.1842 16.10137