Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00936 ATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAATTGCCAGTGATTGAAGTGGCTTCTAACTGTGTTCCATACCCACCACCGCAAACAACGTATGAAGATATCATAGCCAATTCGAAGATCTTTATGACAGCCTTGGAAAAGCTCCACTCCCTCATGGGAACTAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGAATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTCTTTAATTTTCCTTCGACAGCCACCAATGCTTCTTTTGTGTTGAGGAAGTACTATATTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCCGTAGGATGGACACCAGTAACTTCTGATTCCTCTCCATGCCCAAGTGCATCGGCAATTCCTACACAAGGGGTGACTTCTATGTTGCCGCCATCCGATAATCAGGCAGCATCCCACCAACCACAGAGCACAGCAACTGAACTTCCAGCAGTTTCTCCGAGTTCGACATCACCAGTGGGAGGGTTTCCAGTGATTGGAGTAATTGACGGAAAATTTGATAGCGGATATCTTGTTACCGTTACTGTAGGAACGGAGAAGCTAAAAGGCGTGCTTTATCAGGCTCCTGAGCAACCTTCTCAGCCACAAGTGTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTTCCACCCCCACCACACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATAAAGCGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGTGGCTACAACTTCTTTTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAAATAAGCAGAATGATTGGCGATCTTTGGAATAAACTAAAAGAATCTGAAAGAACTGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGTGGATTACAGAGAGAAGCTGAGAACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCGGAGCCAGACCTGAATATGGTCTATGGTGACAAAAATGAAGAAACTGAGGGCGGCGAGTCTCAAACACCAGATCATGATACAAGCTATGTGGAAGGCGACTCTGGAGAGTACAAAACAGAAGAGAAGGAGGAGGACGAGGAGGACGACGAAGAGGATGAAGAGGATGACTCAGAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTCAACATTTTGGTTGAGGAAGAACAGTGTGAGACAAGAACAACAGGAGTAGAGAATGTTAGAAAAGAGAGTAGCACAGTTGGTGATAAGAAAGAAGTTTTGGCTGGGGATTCGGTAATGGTGGAGGTGGAGGCAAAGGAAGTACCAGAACCAACAACAGCAGAACCAACAACAGCAGCAGCCATTAGAGAAGATTAA 1530 45.42 MIEEERTEAGWGSRKELTMASTSFAGGKQLPVIEVASNCVPYPPPQTTYEDIIANSKIFMTALEKLHSLMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYISLLHHFEQIYFFKAVGWTPVTSDSSPCPSASAIPTQGVTSMLPPSDNQAASHQPQSTATELPAVSPSSTSPVGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPEQPSQPQVLQPVGAFAKDGSTPTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMVDYREKLRTGQIISDAVPLQQRLPEPDLNMVYGDKNEETEGGESQTPDHDTSYVEGDSGEYKTEEKEEDEEDDEEDEEDDSEEDASPQGIGNVDVNILVEEEQCETRTTGVENVRKESSTVGDKKEVLAGDSVMVEVEAKEVPEPTTAEPTTAAAIRED* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8837264 8843551 + CsaV3_2G011520.1 Csa02g00936 518993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00936 509 MobiDBLite consensus disorder prediction 489 509 - -
Csa02g00936 509 SUPERFAMILY HMG-box 280 359 IPR036910 -
Csa02g00936 509 SMART hmgende2 286 355 IPR009071 -
Csa02g00936 509 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677
Csa02g00936 509 MobiDBLite consensus disorder prediction 412 435 - -
Csa02g00936 509 SMART bright_3 54 145 IPR001606 GO:0003677
Csa02g00936 509 Coils Coil 414 434 - -
Csa02g00936 509 MobiDBLite consensus disorder prediction 159 202 - -
Csa02g00936 509 MobiDBLite consensus disorder prediction 255 294 - -
Csa02g00936 509 MobiDBLite consensus disorder prediction 267 281 - -
Csa02g00936 509 SMART ARID_2 50 140 - -
Csa02g00936 509 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Csa02g00936 509 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 426 - -
Csa02g00936 509 CDD HMGB-UBF_HMG-box 287 350 - -
Csa02g00936 509 Gene3D - 46 147 IPR036431 GO:0003677
Csa02g00936 509 MobiDBLite consensus disorder prediction 381 395 - -
Csa02g00936 509 Gene3D High mobility group box domain 271 366 IPR036910 -
Csa02g00936 509 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 8 426 - -
Csa02g00936 509 Pfam ARID/BRIGHT DNA binding domain 57 140 IPR001606 GO:0003677
Csa02g00936 509 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 287 354 IPR009071 -
Csa02g00936 509 Pfam HMG (high mobility group) box 287 354 IPR009071 -
Csa02g00936 509 Coils Coil 336 356 - -
Csa02g00936 509 MobiDBLite consensus disorder prediction 368 446 - -
Csa02g00936 509 SUPERFAMILY ARID-like 50 156 IPR036431 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00936 Csa-Chr2:8837264 Csa04g02674 Csa-Chr4:25980637 1.49E-91 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30897 PF01388 ARID 2.10E-17 CL0123 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00936 - - csv:101205891 952.584