Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00936 ATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAATTGCCAGTGATTGAAGTGGCTTCTAACTGTGTTCCATACCCACCACCGCAAACAACGTATGAAGATATCATAGCCAATTCGAAGATCTTTATGACAGCCTTGGAAAAGCTCCACTCCCTCATGGGAACTAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGAATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTCTTTAATTTTCCTTCGACAGCCACCAATGCTTCTTTTGTGTTGAGGAAGTACTATATTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCCGTAGGATGGACACCAGTAACTTCTGATTCCTCTCCATGCCCAAGTGCATCGGCAATTCCTACACAAGGGGTGACTTCTATGTTGCCGCCATCCGATAATCAGGCAGCATCCCACCAACCACAGAGCACAGCAACTGAACTTCCAGCAGTTTCTCCGAGTTCGACATCACCAGTGGGAGGGTTTCCAGTGATTGGAGTAATTGACGGAAAATTTGATAGCGGATATCTTGTTACCGTTACTGTAGGAACGGAGAAGCTAAAAGGCGTGCTTTATCAGGCTCCTGAGCAACCTTCTCAGCCACAAGTGTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTTCCACCCCCACCACACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATAAAGCGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGTGGCTACAACTTCTTTTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAAATAAGCAGAATGATTGGCGATCTTTGGAATAAACTAAAAGAATCTGAAAGAACTGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGTGGATTACAGAGAGAAGCTGAGAACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCGGAGCCAGACCTGAATATGGTCTATGGTGACAAAAATGAAGAAACTGAGGGCGGCGAGTCTCAAACACCAGATCATGATACAAGCTATGTGGAAGGCGACTCTGGAGAGTACAAAACAGAAGAGAAGGAGGAGGACGAGGAGGACGACGAAGAGGATGAAGAGGATGACTCAGAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTCAACATTTTGGTTGAGGAAGAACAGTGTGAGACAAGAACAACAGGAGTAGAGAATGTTAGAAAAGAGAGTAGCACAGTTGGTGATAAGAAAGAAGTTTTGGCTGGGGATTCGGTAATGGTGGAGGTGGAGGCAAAGGAAGTACCAGAACCAACAACAGCAGAACCAACAACAGCAGCAGCCATTAGAGAAGATTAA 1530 45.42 MIEEERTEAGWGSRKELTMASTSFAGGKQLPVIEVASNCVPYPPPQTTYEDIIANSKIFMTALEKLHSLMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYISLLHHFEQIYFFKAVGWTPVTSDSSPCPSASAIPTQGVTSMLPPSDNQAASHQPQSTATELPAVSPSSTSPVGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPEQPSQPQVLQPVGAFAKDGSTPTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMVDYREKLRTGQIISDAVPLQQRLPEPDLNMVYGDKNEETEGGESQTPDHDTSYVEGDSGEYKTEEKEEDEEDDEEDEEDDSEEDASPQGIGNVDVNILVEEEQCETRTTGVENVRKESSTVGDKKEVLAGDSVMVEVEAKEVPEPTTAEPTTAAAIRED* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8837264 8843551 + CsaV3_2G011520.1 Csa02g00936 518993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00936 509 MobiDBLite consensus disorder prediction 489 509 - -
Csa02g00936 509 SUPERFAMILY HMG-box 280 359 IPR036910 -
Csa02g00936 509 SMART hmgende2 286 355 IPR009071 -
Csa02g00936 509 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677
Csa02g00936 509 MobiDBLite consensus disorder prediction 412 435 - -
Csa02g00936 509 SMART bright_3 54 145 IPR001606 GO:0003677
Csa02g00936 509 Coils Coil 414 434 - -
Csa02g00936 509 MobiDBLite consensus disorder prediction 159 202 - -
Csa02g00936 509 MobiDBLite consensus disorder prediction 255 294 - -
Csa02g00936 509 MobiDBLite consensus disorder prediction 267 281 - -
Csa02g00936 509 SMART ARID_2 50 140 - -
Csa02g00936 509 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Csa02g00936 509 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 426 - -
Csa02g00936 509 CDD HMGB-UBF_HMG-box 287 350 - -
Csa02g00936 509 Gene3D - 46 147 IPR036431 GO:0003677
Csa02g00936 509 MobiDBLite consensus disorder prediction 381 395 - -
Csa02g00936 509 Gene3D High mobility group box domain 271 366 IPR036910 -
Csa02g00936 509 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 8 426 - -
Csa02g00936 509 Pfam ARID/BRIGHT DNA binding domain 57 140 IPR001606 GO:0003677
Csa02g00936 509 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 287 354 IPR009071 -
Csa02g00936 509 Pfam HMG (high mobility group) box 287 354 IPR009071 -
Csa02g00936 509 Coils Coil 336 356 - -
Csa02g00936 509 MobiDBLite consensus disorder prediction 368 446 - -
Csa02g00936 509 SUPERFAMILY ARID-like 50 156 IPR036431 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00936 - - - csv:101205891 952.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00936 Csa-Chr2:8837264 Csa04g02674 Csa-Chr4:25980637 1.49E-91 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00936 . 19 384 ARID Transcription Factor Family AT1G04880 56.2 7.2e-105 377.9
Csa03g00010 . 199 478 ARID Transcription Factor Family AT1G20910 60.5 3.0e-91 332.4
Csa04g02674 . 16 310 ARID Transcription Factor Family AT1G76110 68.2 2.1e-112 402.5
Csa03g00010 . 187 508 ARID Transcription Factor Family AT1G76510 60.5 2.7e-109 392.5
Csa03g02792 CCT,ECH 1 773 ARID Transcription Factor Family AT3G43240 59.8 1.1e-267 919.5
Csa07g02313 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 58.0 7.9e-258 886.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30897 PF01388 ARID 2.10E-17 CL0123 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00936 Csa_Chr02 FPKM 5.795232 5.769874 8.496581 8.808636 12.986495 11.390847 12.828692 7.47474 7.973884 7.859297