Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00942 ATGGGTCTCTTCCCATTTGCTCTTCTTTTGCTCTCTTCCTTTTTTCTTTTGAGGTTTTGTTCGGTTTATGGTAGAATTCCTTCCACCGCTGAAGGGCCGTTTAAGCCTGTGACCATCCCACTTGATAAGAGCTTCCGGGGTGTGGCCGAGGACTTGCCGGAAACTGATCCGAGAGTTCAGAAAAATGGGGCTCAGTTTCAGCCCGAGCAGATTTCTGTTTCACTCTCTGTAGATTATGACTCCGTTTGGATTTCTTGGATTACAGGAGACTTTCAAATTGGAGACGACATTCAACCACTAGATCCTGAAGAAGTTGCGAGTATTGTCATGTATGGAAAGTTTAGTATGCCAATGGATAACCAAGCAGAGGGTTATTCTCTTATCTACAATCAACTTTATCCCTTTGAAGGCCTCAGGAACTATACTTCTGGAATTATACACCATGTTCGTCTGACGGGATTGGAGCCTGATACTTTGTACCAATATCAGTGTGGAGACCCTTCAGTTGCAGAAGAAATGAGTGATGTATATTTTTTCAGAACCATGCCTGTTTCTGGGCCTAAGAGTTACCCTAATAGAATAGCAGTGGTTGGTGATTTGGGTCTTACATACAACACTACATCAACAGTTAATCATATTTTGAGTAATCATCCCGACCTTGTTCTATTGATTGGGGATGTGAGTTATGCTAACTTGTATCTTACAAATGGCACTGGCTCTGATTGTTACTCTTGTTCTTTTCCCGAAACTCCTATTCATGAAACTTATCAGCCTCGTTGGGACTTTTGGGGAAGGTATATGCAGCCTCTAGTATCTGAAGTTCCGTTGATGGTGGTGGAAGGGAACCATGAGATAGAACCGCAAGCTGAAAATCAAACATTTGCAGCTTATAGTTCCCGATTTTCATTCCCATCCGAAGAGAGTAACTCTTATTCGACATTTTACTACTCTTTCAATGCTGGTGGCATTCATTTTATAATGCTTGGTGCCTACATTTCATATGATAAATCAAGTGATCAATACAAATGGCTAGAGCAAGACCTGGCTAAAGTTGACAGGAAAGTTACTCCATGGTTGATAGCTACATGGCATCCACCCTGGTACAGCAGCTACACTGCTCATTATAGAGAAGCAGAGTGTATGAAAATGGCAATGGAAGACTTGCTCTACAAGTATAAAGTTGACATAGTTTTCAACGGTCATGTTCATGCCTATGAGAGGTCGAATAGAGTATATGACTACACTTTGGATCGTTGTGGTCCTGTCTACATAACAGTAGGTGATGGTGGTAACCGAGAGAAAATGGCAATTGAACATGCTGATGAACCTGGAAACTGTCCAGACCCATTCTCGACACCGGATGAATACATGGGTGGCTTCTGTGCATTCAATTTCACATCAGGCCCAGCTGAAGGAAAATTCTGCTGGGATCAGCAACCTGATTATAGTGCATATCGTGAAAGTAGTTTCGGCCATGGCATTTTGGAGGTGAAAAATGAAACTCATGCGTTGTGGACTTGGCATCGAAACCAGGACTCATATAAATCAGTTGGGGATATAATATACATCGTACGACAACCAGACATTTGTCTAATTGAGCAGAAGGTACATACATACAGACATGGAAAACAAGAAGATATGTGA 1644 41.91 MGLFPFALLLLSSFFLLRFCSVYGRIPSTAEGPFKPVTIPLDKSFRGVAEDLPETDPRVQKNGAQFQPEQISVSLSVDYDSVWISWITGDFQIGDDIQPLDPEEVASIVMYGKFSMPMDNQAEGYSLIYNQLYPFEGLRNYTSGIIHHVRLTGLEPDTLYQYQCGDPSVAEEMSDVYFFRTMPVSGPKSYPNRIAVVGDLGLTYNTTSTVNHILSNHPDLVLLIGDVSYANLYLTNGTGSDCYSCSFPETPIHETYQPRWDFWGRYMQPLVSEVPLMVVEGNHEIEPQAENQTFAAYSSRFSFPSEESNSYSTFYYSFNAGGIHFIMLGAYISYDKSSDQYKWLEQDLAKVDRKVTPWLIATWHPPWYSSYTAHYREAECMKMAMEDLLYKYKVDIVFNGHVHAYERSNRVYDYTLDRCGPVYITVGDGGNREKMAIEHADEPGNCPDPFSTPDEYMGGFCAFNFTSGPAEGKFCWDQQPDYSAYRESSFGHGILEVKNETHALWTWHRNQDSYKSVGDIIYIVRQPDICLIEQKVHTYRHGKQEDM* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8886082 8894234 - CsaV3_2G011580.1 Csa02g00942 518999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00942 547 CDD MPP_PAPs 188 525 IPR041792 -
Csa02g00942 547 Pfam Iron/zinc purple acid phosphatase-like protein C 420 516 IPR025733 -
Csa02g00942 547 SUPERFAMILY Metallo-dependent phosphatases 193 514 IPR029052 -
Csa02g00942 547 PANTHER ACID PHOSPHATASE RELATED 15 538 IPR039331 GO:0003993
Csa02g00942 547 PANTHER PURPLE ACID PHOSPHATASE 15 15 538 - -
Csa02g00942 547 Pfam Purple acid Phosphatase, N-terminal domain 68 181 IPR015914 GO:0003993|GO:0046872
Csa02g00942 547 Gene3D - 67 184 - -
Csa02g00942 547 Pfam Calcineurin-like phosphoesterase 193 405 IPR004843 GO:0016787
Csa02g00942 547 Gene3D - 188 464 IPR029052 -
Csa02g00942 547 Gene3D - 465 527 IPR029052 -
Csa02g00942 547 SUPERFAMILY Purple acid phosphatase, N-terminal domain 48 183 IPR008963 GO:0003993|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00942 K22390 ACP7; acid phosphatase type 7 - csv:101214711 1142.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g00942 Csa03g01127 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00942 Csa-Chr2:8886082 Csa03g01127 Csa-Chr3:8873742 0 dispersed
Csa02g00942 Csa-Chr2:8886082 Csa02g02096 Csa-Chr2:19060289 3.93E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g848 . . . . . . . . . . . Cma14g01873 . Car14g01675 Sed12g0408 . Cpe03g01571 Bhi01g00061 Tan10g0557 Cmetu06g2760 . . . Lcy11g1746 . . . . . . . . . . Cone4ag0384 Lsi05g01814 Csa02g00942 . Cme06g00409 . Blo07g00296 Bda11g00659 . . . . Bma06g01625 . . Cmo14g01919 . . . . . . . . . . . . . Cla05g00371 Cam05g0404 Cec05g0409 Cco05g0409 Clacu05g0399 Cmu05g0384 Cre05g0446 . Csa03g01127 Chy06g00394 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004148 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 2 2 7 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00942 Csa_Chr02 FPKM 2.376081 2.284365 1.979606 2.023727 4.433275 4.314946 3.388909 3.863299 4.001545 3.568575