Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00947 ATGGCCGGCCTATCGCTCCAGTGCGGAGACTGTGGCGTACTCTTGAAATCCGTAGAAGAAGCTCAACAACATGCCGAACTCACTTCTCACTCCAACTTCTCCGAGTCCACCGAAGCAGTGCTCAATCTCGTCTGCACTGCTTGTGGCAAGCCCTGCCGATCCAAGACGGAAAGTGATTTGCATACGAAAAGGACTGGCCATACCGAGTTTGCTGATAAGACTTTGGAGGCTGCAAAACCAATAAGTTTGGAGGCTCCAAAGGTAGATGCGGAAGCAGAAGATGGCGGAGATGCAAGTGCTAGCAAGTCTGAAGAAATGGTTGTGCCAGAGGTGAACAAAAATATATTAGAGGAACTTGAAGCTATGGGCTTTCCAACAGCACAAGCAACCCGTGCACTCTTTTATTCTGGTAATTCTAGTCTTGAGGCAGCAGTCAATTGGGTAGTCGAACATGAGAATGATCCGGAGATAGACCAGATGCCTTTGGTTCCCAAGGACACAAAGGTTGAGGCTCCAAAGCCTTCGCTTACACCTGAGCAATTGAAAGCAAAACAGCAGGAGCTAAGGGAACGGGCTAGGAAGAAAAAGGAGGAGGAAGAGAAGATAACTGAAAGAGAAAGGGAAAAGGAGAGAATTCGAATTGGCAAGGAGCTCTTAGAAGCGAAAAGGATCGAGGAAGAAAATGAGAGAAAAAGAATATTAGCCTTGAGAAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGGGAAAAAATTCGTCAAAAACTTGAAGAGGACAAGGCAGAAAGAAGACGGAGGCTTGGATTGCCACCAGAAGATCCTTCAACTGCAAAACCTCCGGCACCTGTTGTTGAAGAGAAAAAGTTGTCTTTACCGGTTAGACCTGCTTCAAAGGCAGAGCAAATGAGAGAATGTTTGCGATCATTAAAGTCCAATCACAAGGAGGATGATGCTAAAGTGAAGAGAGCGTTTCAAACCCTTCTAACTTATGTGGGAAACGTGGTGAAAAGTCCTGATGAAGAGAAGTTCAGAAAAATTAGACTTAGCAACCAAACTTTCCAGGATAGAGTGGGTGCACTGAGAGGAGGAATTGAGTTTCTAGAGCTGTGCGGGTTCGAAAAAATCGAAGGCGGTGAGTTCTTGTTTCTGCCCAGAAACAAGGTTGACAGGGCAGTGCTCAATTCAGCTGGTTCTGAGCTCGACTCTGCTATTAAAAATCCTTTCTTTGGCGTCCTCTAA 1236 45.63 MAGLSLQCGDCGVLLKSVEEAQQHAELTSHSNFSESTEAVLNLVCTACGKPCRSKTESDLHTKRTGHTEFADKTLEAAKPISLEAPKVDAEAEDGGDASASKSEEMVVPEVNKNILEELEAMGFPTAQATRALFYSGNSSLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPSLTPEQLKAKQQELRERARKKKEEEEKITEREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLGLPPEDPSTAKPPAPVVEEKKLSLPVRPASKAEQMRECLRSLKSNHKEDDAKVKRAFQTLLTYVGNVVKSPDEEKFRKIRLSNQTFQDRVGALRGGIEFLELCGFEKIEGGEFLFLPRNKVDRAVLNSAGSELDSAIKNPFFGVL* 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8924243 8940135 + CsaV3_2G011630.1 Csa02g00947 519004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00947 411 Coils Coil 181 213 - -
Csa02g00947 411 MobiDBLite consensus disorder prediction 252 270 - -
Csa02g00947 411 SUPERFAMILY PUG domain-like 297 407 IPR036339 -
Csa02g00947 411 SMART PGNneu 321 384 - -
Csa02g00947 411 CDD PUB_UBA_plant 305 411 - -
Csa02g00947 411 SUPERFAMILY UBA-like 97 164 IPR009060 GO:0005515
Csa02g00947 411 Pfam PUB domain 318 389 IPR018997 -
Csa02g00947 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Csa02g00947 411 MobiDBLite consensus disorder prediction 167 208 - -
Csa02g00947 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Csa02g00947 411 MobiDBLite consensus disorder prediction 81 106 - -
Csa02g00947 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Csa02g00947 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Csa02g00947 411 Gene3D - 303 401 - -
Csa02g00947 411 Pfam UBA/TS-N domain 116 147 IPR015940 -
Csa02g00947 411 MobiDBLite consensus disorder prediction 252 283 - -
Csa02g00947 411 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Csa02g00947 411 Coils Coil 224 261 - -
Csa02g00947 411 CDD UBA_PUB_plant 110 158 - -
Csa02g00947 411 MobiDBLite consensus disorder prediction 183 208 - -
Csa02g00947 411 MobiDBLite consensus disorder prediction 86 100 - -
Csa02g00947 411 Gene3D - 113 157 - -
Csa02g00947 411 SMART uba_6 112 150 IPR015940 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00592 Csa-Chr2:4280282 Csa02g00947 Csa-Chr2:8924243 3.28E-91 dispersed
Csa02g00947 Csa-Chr2:8924243 Csa05g01981 Csa-Chr5:23172524 1.91E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00947 K24348 - csv:101215434 707.983