Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00989 ATGGCGGCACTTACTAAATGGTCTTCTCTGTCTCTCTTTGCCCTTGCATTGCTGTTTTTCCTAACAATCGCTCTCGTTCGCAAAGAAGAGACCTCCAAAATTAGGACTGTGTCAGCGGCGGAGTTTCAGAGCTCCAGCAACTCATCAATGGCGACTAGGGTGGAGAATTATGATGTGGAGCAAGAACTCAACAATGAACATGCTGTGGATAATCCTGATGAGATTGCTGCTTCTGTTGAGATGAGCATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACAGGGAATCCCATTGACGACTGCTGGCGTTGTGACTCCAATTGGCACCGTAACCGTAAACGCCTTGCGGAATGTGGCATTGGATTTGGGCGGAATGCTATTGGTGGACGTGATGGCCGTTTCTATGTTGTCACTGATTCGAGTGACAACGATCCGGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTTATTCAAGAGAAACCTCTTTGGATCGTGTTCAAAAGGGATATGGTGATTCGATTGAAACAGGAACTCATCATGAACAGTTTTAAGACAATTGATGCTCGAGGGGTAAATGTACACATTGCTAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTACACATCCATGATTGCAAACCCACAGGGAATGCCATGGTGAGAAGCTCTCCATCTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGTTCAAGCCATATATGGATTGACCACAATTCACTCTCTAATTGTGCTGACGGACTTGTTGATGCTGTTATGGGCTCAACTGCAATCACGATCTCCAACAATCACTTCACTCATCATAATGAGGTGATGCTTCTAGGCCACAGTGATTCCTACACGAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAAGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCCATTGGTGGGAGTGCAAATCCCACCATCAATAGTCAAGGAAACAGATATGCTGCTCCAACCAACCGTTTTGCCAAAGAGGTGACAAAGCGAGTTGAAACACCAGAGAGCGAATGGAAGGGGTGGAATTGGAGATCAGAAGGAGATATGTTGCTGAATGGAGCCTATTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCTTCCAGCTTAGGAGCGAAATCTGCTTCCATGGTTGGCTCCATCACTTCTTCTGCAGGTTCACTCCCTTGTCGCCGAGGCCATCCATGCTAG 1350 46.59 MAALTKWSSLSLFALALLFFLTIALVRKEETSKIRTVSAAEFQSSSNSSMATRVENYDVEQELNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIRLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNRFAKEVTKRVETPESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9495612 9499971 - CsaV3_2G012050.1 Csa02g00989 519046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00989 449 Pfam Pectate lyase 187 364 IPR002022 -
Csa02g00989 449 PANTHER PECTATE LYASE 21 446 - -
Csa02g00989 449 Gene3D - 100 442 IPR012334 -
Csa02g00989 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Csa02g00989 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Csa02g00989 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Csa02g00989 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Csa02g00989 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Csa02g00989 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Csa02g00989 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Csa02g00989 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Csa02g00989 449 SUPERFAMILY Pectin lyase-like 77 443 IPR011050 -
Csa02g00989 449 PANTHER PECTATE LYASE 18-RELATED 21 446 IPR045032 GO:0030570
Csa02g00989 449 SMART amb_all 175 372 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00913 Csa-Chr1:5694974 Csa02g00989 Csa-Chr2:9495612 0 dispersed
Csa02g00989 Csa-Chr2:9495612 Csa05g01868 Csa-Chr5:21944533 0 dispersed
Csa05g02422 Csa-Chr5:26233901 Csa02g00989 Csa-Chr2:9495612 9.61E-170 dispersed
Csa06g02231 Csa-Chr6:20103120 Csa02g00989 Csa-Chr2:9495612 3.81E-168 dispersed
Csa02g00989 Csa-Chr2:9495612 Csa03g01128 Csa-Chr3:8895882 0 wgd
Csa02g00989 Csa-Chr2:9495612 Csa03g02663 Csa-Chr3:25266042 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00989 K01728 - csv:101217580 897.886