Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01000 ATGGCGGCTACAGATTGCTCTCTCACTCTCGCCCAACTCCTCGGTCCAAATGTCACCAACTCCGGTGCCGCCGCCTCCTTCATTTGCGACCAATTCACCACCTCCACCAACAACTTCTCCGACACCAAATTCGCCGTCGACACCGTCTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCCATGCAGCTCGGCTTCGCCATGCTCTGTGCCGGCTCCGTCCGCGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTTGACGCCGCTGCCGGTGGCCTTTTCTACTACCTCTTCGGTTTCGCCTTTGCTTTTGGCACTCCCTCCAACCCCTTCATCGGCCGTCATTTCTTTGGCCTCAAGTCAATCCCGTCCACAGCCGCCGATTACAGCTTCTTTCTCTATCAGTGGGCTTTCGCCATCGCCGCCGCCGGTATCACCAGCGGCTCAATTGCCGAGCGAACCCAATTCGTTGCCTATTTGATCTACTCCTCTGTTTTGACCGGTTTTGTTTACCCGGTTGTGTCCCATTGGTTCTGGTCTCCAGACGGTTGGGCCAGCCCGTCACGGACTGATGGTGATCTCTTATTTGGAACCGGAGTCATAGATTTCGCCGGTTCAGGCGTGGTTCACATGGTTGGTGGAATCGCTGGACTTTGGGGTGCTTTAATAGAAGGTCCACGAATTGGCCGATTCGACAAAACCGGTAGATCCGTTGCTTTACGAGGCCATAGTGCTACGTTAGTCGTTCTCGGTACGTTCATGCTTTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCCTTCACTAAGATCTTAGTTCCTTATGGTTCAAATAATTTCTACGGACAATGGAGCGCTGTCGGTCGGACCGCCGTGACAACAACTCTAGCTGGTTGCACAGCAGCACTAACGACCCTTTTCGGAAAACGAATTTTATCCGGCCATTGGAATGTCACCGATGTCTGCAACGGCTTACTTGGTGGGTTCGCCGCCATAACCTCCGGCTGCTCGGTGGTGGAGCCGTGGGCGGCTGTGATATGTGGGTTTGTGGCAGCGGTGGTTTTAATCAGCTGCAATAAACTAGCAGAGAAGGTGAAATTCGACGACCCATTAGAGGCGGCACAATTGCACGGCGGTTGCGGGGCGTGGGGGATAATATTCACCGCTTTGTTCGCGTCAAAGAAGTATGTAAACGAGGTGTACGGTGGGGATGCGGGGCGGCCACACGGGTTATTTATGGGTGGGGGAGGGAAGTTGCTGGGTGCACATTTGATACAAATTTTGGTGATTATTGGTTGGGTTAGTGCTACAATGGGGCCATTGTTTTATGGGTTACATAAGCTGAAACTATTAAGAATCTCGTCGGAGGATGAGATGGCCGGAATGGATATGACTAGACATGGTGGATTTGCTTATGTCTACCACGATGAAGATGAATCTCCGACCAATGGGATCCAAATTAGTAGGATTAAGCCAAGGGAAACAAGTCCAATTGAAAATTAA 1503 52.03 MAATDCSLTLAQLLGPNVTNSGAAASFICDQFTTSTNNFSDTKFAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNPFIGRHFFGLKSIPSTAADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWASPSRTDGDLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDKTGRSVALRGHSATLVVLGTFMLWFGWYGFNPGSFTKILVPYGSNNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAAVVLISCNKLAEKVKFDDPLEAAQLHGGCGAWGIIFTALFASKKYVNEVYGGDAGRPHGLFMGGGGKLLGAHLIQILVIIGWVSATMGPLFYGLHKLKLLRISSEDEMAGMDMTRHGGFAYVYHDEDESPTNGIQISRIKPRETSPIEN* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9652408 9654826 + CsaV3_2G012160.1 Csa02g01000 519057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01000 500 Gene3D Ammonium transporter AmtB like domains 26 491 IPR029020 -
Csa02g01000 500 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Csa02g01000 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Csa02g01000 500 PANTHER AMMONIUM TRANSPORTER 5 495 - -
Csa02g01000 500 SUPERFAMILY Ammonium transporter 46 453 - -
Csa02g01000 500 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 5 495 - -
Csa02g01000 500 TIGRFAM amt: ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00788 Csa-Chr2:6708360 Csa02g01000 Csa-Chr2:9652408 0 dispersed
Csa02g00790 Csa-Chr2:6740629 Csa02g01000 Csa-Chr2:9652408 0 dispersed
Csa02g01000 Csa-Chr2:9652408 Csa03g01153 Csa-Chr3:9037503 0 dispersed
Csa02g02362 Csa-Chr2:20952657 Csa02g01000 Csa-Chr2:9652408 1.49E-25 transposed
Csa03g03043 Csa-Chr3:28760862 Csa02g01000 Csa-Chr2:9652408 1.98E-24 transposed
Csa02g01000 Csa-Chr2:9652408 Csa03g02642 Csa-Chr3:24916558 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01000 K03320 - csv:101212168 973.0