Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01012 ATGGCTTCGGCTCAGGTTTTGCCCAATTCGATGGCTTCGACTCGAAAATTAGAGCATTTGGAAGCAGGGAAGCGTCGGTTAGAGGAGTTCAGAAAGAAAAAAGCAGCAGAGCGAGTAAAGAAAGCTGCACCACCAAGCCAAAATCACGTTTCAGATGCTGGCTCTGAGGAGAAGAAGCCTTTAGAATCTGAACATGCTCAAAGGATTACAGATTCTGATGGAGCTACAACAACTAACGGAGCAGGCAGATCTGCCATTGAATCATCCTCTGCTCTGGTCAAAGATGATAGACATGCAGACGACTTTTCTCAAAACATTAATCAAAATGCGTTGAATGAAAAACATGCAAGCTATCCTTTTTCAAGAAATACCGATGGAGTCTTCTCCACTGATCCAGTGAAGCAACCATCAAATGGTCAAGAAATTAATACATTCAATGGTTCGAGGCTTTTTGGACCCACAGATGTTAATAGTAGAAACGAGATATTAGAGATAAATAAAGACTCCGAATTAATCAATGGACCCCAGGCTAGAATTTCGTTTCAGAGTGCATTTGGCATTAACCCTCAAGCAAGTGAAGGGACCGATAGCATTATTAGTCAATCTGCTCACCATGGGGTGGATGGACTACTCTTTAGGAGAGATAGTCAAGAAAATTCTATGCTTAAAAGTTCTGGTTCTTTGCATAAGTTTTCTGCAAATATTTCTCTACAGAATACTGTTGCCAATTTACAAGATACTGATTCCAGTAGTAATAATAATTTGGCTAGTGGAAATTCTTTCCAGTCATCTTATGATGGCTTATTTAATAATTCGACTAGAAAAGGATATAATTCCCATGAAGTTGGGGAAAGCATGCACAGAAATTTTGAACAGGGGAAGCCCATTGATGTGACTGATTTTACTAGAATCAAGCCTGAATCTGTGCAATCATCTGAACCTACTGGCTTGGATGCTGATATTAGACTCCCCTCCAACTATGAACCCCCATACACTGCATCATCTGAAAATAGTTTTAGGAGATCTCGCCCATCATTTCTTGATTCTCTTTCTGTACCTAAGGCTTCTTCAGGGAGTTTTCTTGGACATGGTGAACGTGATAAGGAACCTGGATTATCTGATGGGTTTAAATTTAACAAAGATGGCCCAGCATCTTTCTCCTTTCAGAACTCTATAAAATCTGATGGGTTTAGAACAGATGAACGCGATGGCTCAGAGTCATTAACTTTACAGAAGCCATTAATGGATGTGAAAACATTGGGAACGCCCTCACATTTTACCTCTCAAAACACTCCCGTGTCATATAGCAATTCATTTCCTCCTTCAGTTTTTCCTGTTAAGGACCAGCCAATTATAGGAATAGAGGATAATACTATGGAGAGGAAACATGAGCTTTATTCATCCAAGCAAAATGAAGATTTTGCTGCTCTGGAACAGCATATTGAAGACTTGACGCAAGAGAAATTCTCGTTACAAAGAGCTTTGGATGCTTCAAGGACTTTAGCAGAGTCCTTAGCTGCTGAAAATTCATCTCTTACTGATAGTTATAACAAACAGAGAAGCGTTGTCAACCAACTAAAATCAGATATGGAGATGTTACAGGAGGAAATGAAGACTCAAATGGTTGAACTGGAGTCTATCAAACTTGAGTATGCAAATGCACAACTAGAGTGTAATGCAGCGGATGAACGTGCCAAGTTGATAGCTTCTGAAGTAATTGGCCTTGAAGAGAAGGCCTTAAGACTAAGGTCTAATGAGTTAAAGCTGGAGAGGCAGTTGGAGAACAAGGAAGCTGAGATCTCTTCATACAAGAAAAAAATGTCTAGCATGGAGAAAGAACGTCATGATTTTCAATCGACTATTGAGGCTCTTCAGGAAGAGAAGAAGCTGTTGCAGTCTAAGTTACGGAAAGCTTCAGCAAGTGGAAAGTCTATTGATATTAGCAATCCTTCTAATAAAAAAGACATGGCGACATCTACGGAAGATTTAGTAGTTGTAGATGCTTCTCCTAGTACTTTTAACCACGACGAATCTCTTACCGAAGATGATGCCTCTGGAGCTCCCATGCTGCTTCAAAATGCCACTACTGAAGTTTCATCCGTCATTATCCCTTCCGATCATATGAGGATGATTCAAAACATCAATGCTCTGATAGCTGAGTTAGCTGTCGAGAAAGAGGAGTTAACAAAAGCTTTGGCATCTGAGTTGGCTAGTAGTTCTAAGTTGAAGGAGTTGAACAAAGAGTTGTCTAGGAAACTAGAAGCACAAACTCAAAGATTAGAGCTTTTGACTGCTCAAAGTATGGCTGGTGAGATTGTTCCTGCGAGACTACCTGATTATCACACAACACGTGATGAAGATATTGTACTTGCAGATGAGGGCGATGAGGTGGTGGAAAGAGTCTTGGGATGGATTATGAAGCTCTTCCCTGGTGGCCCGTCGCGCCGAAGGACCAGCAAGCTTCTTTGA 2469 40.75 MASAQVLPNSMASTRKLEHLEAGKRRLEEFRKKKAAERVKKAAPPSQNHVSDAGSEEKKPLESEHAQRITDSDGATTTNGAGRSAIESSSALVKDDRHADDFSQNINQNALNEKHASYPFSRNTDGVFSTDPVKQPSNGQEINTFNGSRLFGPTDVNSRNEILEINKDSELINGPQARISFQSAFGINPQASEGTDSIISQSAHHGVDGLLFRRDSQENSMLKSSGSLHKFSANISLQNTVANLQDTDSSSNNNLASGNSFQSSYDGLFNNSTRKGYNSHEVGESMHRNFEQGKPIDVTDFTRIKPESVQSSEPTGLDADIRLPSNYEPPYTASSENSFRRSRPSFLDSLSVPKASSGSFLGHGERDKEPGLSDGFKFNKDGPASFSFQNSIKSDGFRTDERDGSESLTLQKPLMDVKTLGTPSHFTSQNTPVSYSNSFPPSVFPVKDQPIIGIEDNTMERKHELYSSKQNEDFAALEQHIEDLTQEKFSLQRALDASRTLAESLAAENSSLTDSYNKQRSVVNQLKSDMEMLQEEMKTQMVELESIKLEYANAQLECNAADERAKLIASEVIGLEEKALRLRSNELKLERQLENKEAEISSYKKKMSSMEKERHDFQSTIEALQEEKKLLQSKLRKASASGKSIDISNPSNKKDMATSTEDLVVVDASPSTFNHDESLTEDDASGAPMLLQNATTEVSSVIIPSDHMRMIQNINALIAELAVEKEELTKALASELASSSKLKELNKELSRKLEAQTQRLELLTAQSMAGEIVPARLPDYHTTRDEDIVLADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL* 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9802088 9820726 - CsaV3_2G012280.1 Csa02g01012 519069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01012 822 Coils Coil 467 494 - -
Csa02g01012 822 MobiDBLite consensus disorder prediction 303 340 - -
Csa02g01012 822 Coils Coil 739 766 - -
Csa02g01012 822 MobiDBLite consensus disorder prediction 357 409 - -
Csa02g01012 822 MobiDBLite consensus disorder prediction 1 97 - -
Csa02g01012 822 PANTHER PROTEIN BLISTER 1 822 IPR044194 GO:0040008
Csa02g01012 822 MobiDBLite consensus disorder prediction 110 150 - -
Csa02g01012 822 MobiDBLite consensus disorder prediction 17 40 - -
Csa02g01012 822 MobiDBLite consensus disorder prediction 70 86 - -
Csa02g01012 822 Coils Coil 711 731 - -
Csa02g01012 822 MobiDBLite consensus disorder prediction 52 69 - -
Csa02g01012 822 Coils Coil 516 564 - -
Csa02g01012 822 Coils Coil 579 641 - -
Csa02g01012 822 MobiDBLite consensus disorder prediction 361 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01012 - - - csv:101216257 1511.89
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g814 . . . . Bpe04g01051 . Bma04g01032 . Cmo08g01019 Cmo17g00127 . . . . . . . . . . . . . . . . . . . . . Cone14ag0199 Cone15ag0212 . . . Csa02g01012 Chy05g00276 . . . . . . . . . Sed09g0207 . . Cma08g01048 Cma17g00125 Car08g00923 Car17g00111 Cpe12g00109 . Bhi12g01537 Tan06g2351 Cmetu05g1285 . . . Lcy13g0426 . . . . . . . Lsi09g01178 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004173 0 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 3 1 1 5 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01012 Csa_Chr02 FPKM 5.338905 3.693448 6.350421 6.346291 6.978142 9.525229 7.655524 11.661965 10.645607 10.441615