Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01018 ATGACTGCGCCGGATACTGAACCGGTAGTCCCTTCTTCTTCCCAAGTGAAGGTGAAGAAGAAAAAGCAGAAGACCGCTGCAGTCTCTAATTCAGGCGTAGATCTGAAATCCATTATCCATAACCATGCGTTGTTCTTTGATAAGTTAGTGGAGCTTATCCCGGTAAGGTTCTATTTATCTAGTGATGAAAAAGGAAAACCTTGGTTTCAGGGCCTTAGCAAGAAAGAAAAGGCAATGGCTAAGAAGGAATCAAAGGAAAACCTTAAGAAAGCACGAAGAGATCGTATGGATCCAGAAAAGTCTTCTAAATCAACTGTTCATTTGCTTAAAGAAAGCTTGGAAAATGAAAAGTTGAAAAGTAAAAATGACGATGATGGAGATGATGTTAAGCCAGTGGCAACTGGGTGGGACAGTGATGACCAGTCAGTGACATATGAAGAACTGAGACAACGCCTTCATCGAAAAATTGAGGAGTTCCGGGTGAATAGAAATACAGGATGTTCAAATAGGGAAAAGAAGAGAAATGAAAGAAACGAGAGAAGGGAAGCTATCCAGAAGAAACGCAAGAGAGAAAATGACTCTGACGAGAAGAAATCAGTCACCATGCCCTCAGAAATTGAAATGGAGAGGAATGTAGTTGAGGCCTCCAAAGAACTTGCGTTTGGTCATGTTAAACTGGGAACTGAAGAAGAGCAAGGTAAGAATAAGAAAAAAAAACTCTCCAAGTTGAAGGAACTTGAAAAGGCAAAAAAGTTGGAAGAAGCAAAGAAAGACCCCGGAAAGGGCGAGATAGTATTGAAGAAGCATTCTTGGCAAGCAGCAACAAGTAGAGCTGCTGGGTTTAAAGTTCATGATGATCCACAGCGTCTGATGAAGAGTTTACGGAAGGAAAAGAAACAACAGCTGAAGAGTGTCGAGAAATGGAAAGGTAGAATTGAAACCACCCAGAAGATGAAAGCAGAAAGACAACAAAAGAGATCTGAAAACATAGCTCAGAAAATCCATGACAAGAAGATGAAACGGATTGAAAAGAGGGAGAAAAAGTTAATGCGCCCTGGCTTCGAAGGTCGCAAGGATGGTTTCATTAATGGAAGCAGCGCATGA 1104 41.21 MTAPDTEPVVPSSSQVKVKKKKQKTAAVSNSGVDLKSIIHNHALFFDKLVELIPVRFYLSSDEKGKPWFQGLSKKEKAMAKKESKENLKKARRDRMDPEKSSKSTVHLLKESLENEKLKSKNDDDGDDVKPVATGWDSDDQSVTYEELRQRLHRKIEEFRVNRNTGCSNREKKRNERNERREAIQKKRKRENDSDEKKSVTMPSEIEMERNVVEASKELAFGHVKLGTEEEQGKNKKKKLSKLKELEKAKKLEEAKKDPGKGEIVLKKHSWQAATSRAAGFKVHDDPQRLMKSLRKEKKQQLKSVEKWKGRIETTQKMKAERQQKRSENIAQKIHDKKMKRIEKREKKLMRPGFEGRKDGFINGSSA* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9928305 9931417 + CsaV3_2G012340.1 Csa02g01018 519075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01018 367 MobiDBLite consensus disorder prediction 73 134 - -
Csa02g01018 367 Coils Coil 291 311 - -
Csa02g01018 367 MobiDBLite consensus disorder prediction 310 339 - -
Csa02g01018 367 MobiDBLite consensus disorder prediction 158 205 - -
Csa02g01018 367 Pfam Surfeit locus protein 6 170 341 IPR029190 -
Csa02g01018 367 Coils Coil 236 256 - -
Csa02g01018 367 MobiDBLite consensus disorder prediction 348 367 - -
Csa02g01018 367 Coils Coil 74 94 - -
Csa02g01018 367 MobiDBLite consensus disorder prediction 1 32 - -
Csa02g01018 367 Coils Coil 170 193 - -
Csa02g01018 367 Pfam 60S ribosome biogenesis protein Rrp14 39 99 IPR029188 -
Csa02g01018 367 MobiDBLite consensus disorder prediction 73 143 - -
Csa02g01018 367 MobiDBLite consensus disorder prediction 310 342 - -
Csa02g01018 367 PANTHER BNAC02G02430D PROTEIN 15 364 - -
Csa02g01018 367 PANTHER SURFEIT LOCUS PROTEIN 6 15 364 IPR007019 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01018 - - - csv:101209715 619.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00042 Csa-Chr1:248715 Csa02g01018 Csa-Chr2:9928305 1.13E-161 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g802 Blo01g00305 . . Bda08g00009 Bpe04g00978 . Bma04g01025 Bma05g01260 . Cmo17g00131 . . . . . . . . . . . . . . Cla06g00706 Cam06g0756 Cec06g0762 Cco06g0774 Clacu06g0747 Cmu06g0730 Cre06g1507 Cone14ag0191 Cone15ag0201 . . . Csa02g01018 Chy05g00282 . . . . . Bpe05g01114 . . . . . . . Cma17g00129 . Car17g00115 Cpe12g00113 . . . . . . . . . . . . . . . Lsi09g01186 . . Cme05g00627
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002685 1 3 0 3 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 2 2 1 1 2 2 2 2 1 7 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01018 Csa_Chr02 FPKM 1.621753 1.68128 8.018703 10.220789 8.044337 10.123034 7.908645 0.169839 0.266736 0.155258