Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01023 ATGGTCTTAGCACACCTTCATTTTGATCAAGTTTATGACCAGTTTCAATATGTTGACTTGAACAGAGCCGGAGTGCCATTGCTTGAGATTGTTTCTGAACCTGACATGAGAACTGGGATTGAAGCTGCAGAGTATGCTGCAGAATTACAGAGGTTGGTTAGATATTTGGGTGTAAGTAATGGAAACATGCAAGAAGGTTCTCTACGGTGTGATGTGAATGTCTCTGTCCGTCCTATTGGGCAGTCACAATTTGGAACAAAGGTGGAGATAAAAAACTTGAACTCATTTTCATCGGTGAGCAGAGCAATTGATTTTGAAATTTCAAGACAAGTGCTTCTCCATAGTCAAGGCCAAAGTGATCAAATTGTACAGGAAACCAGACTCTGGGAAGAAGGCGCCCAGAAAACAATTACAATGAGGAAAAAGGAAGGACTTTCTGATTATCGATATTTTCCAGAGCCTGATCTCCCAGAAGTCATCCTAACAAAAGAATATGTTGAAAATATTCATGATTCTTTGCCCGAACTTCCAGAAATGAAGCGTAGAAGATATGAGAGTATGGGCCTGAGCATGCAGGATGTACTTTTCCTGGCAAATGACATCAGTGTGGCTGAGTTTTTTGATGCAACTATTGCAAGAGGGGCCGAAGTGAAGCTGGCTGCTAATTGGATAATGGGTGATATTGCTGCGTACATGAAAAATGAGAAGTTGACTATAAACGACATAAAGCTCACTCCTCAAGAGCTTGCTGAATTGATCGCTTCAATAAAAGGTGGTACTATTAGTGGAAAGATTGGGAAAGAGATTCTTTTTGAGTTGCTAGCTAAAGGTGGAACTGTGAAGGGGCTGATTAAAGATAAGGATTTGGTTCAGATTGCAGATCCTGCTGAGATAGAAAAAATGGTGGAAAAAGTATTGGCAGAGAATCCGAAGCAGCTTGAGCAATATCGTGGGGGCAAAACCAAGTTGCAAGGCTTTTTTGCAGGCCAGGTAATGAAAGCATCCAAAGGTAAAGCAAATCCAGGGCTTCTAAACAAGATCCTCTTGGAGAAATTGAATGCGCAAAGCTGA 1071 41.27 MVLAHLHFDQVYDQFQYVDLNRAGVPLLEIVSEPDMRTGIEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSVRPIGQSQFGTKVEIKNLNSFSSVSRAIDFEISRQVLLHSQGQSDQIVQETRLWEEGAQKTITMRKKEGLSDYRYFPEPDLPEVILTKEYVENIHDSLPELPEMKRRRYESMGLSMQDVLFLANDISVAEFFDATIARGAEVKLAANWIMGDIAAYMKNEKLTINDIKLTPQELAELIASIKGGTISGKIGKEILFELLAKGGTVKGLIKDKDLVQIADPAEIEKMVEKVLAENPKQLEQYRGGKTKLQGFFAGQVMKASKGKANPGLLNKILLEKLNAQS* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9946289 9949531 + CsaV3_2G012390.1 Csa02g01023 519080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01023 356 SMART gatb_yqey_2 205 352 IPR018027 GO:0016884
Csa02g01023 356 Gene3D - 174 228 IPR042114 -
Csa02g01023 356 PANTHER GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B, MITOCHONDRIAL 13 354 - -
Csa02g01023 356 PANTHER GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED 13 354 IPR017959 GO:0016884
Csa02g01023 356 SUPERFAMILY Glutamine synthetase/guanido kinase 13 174 IPR014746 GO:0003824
Csa02g01023 356 ProSitePatterns Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 20 34 IPR017958 GO:0016884
Csa02g01023 356 Pfam GatB/GatE catalytic domain 14 167 IPR006075 GO:0016874
Csa02g01023 356 Pfam GatB domain 205 352 IPR018027 GO:0016884
Csa02g01023 356 Gene3D - 292 353 IPR023168 -
Csa02g01023 356 TIGRFAM gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 7 353 IPR004413 GO:0016884
Csa02g01023 356 SUPERFAMILY GatB/YqeY motif 175 278 IPR003789 GO:0016884
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01023 K02434 gatB, PET112; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] - csv:101209226 650.588
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g796 . . Bda03g01099 . . . Bma04g01024 . Cmo08g01027 Cmo17g00134 . . . . . . . . . . . . . . Cla06g00702 Cam06g0753 Cec06g0759 Cco06g0771 Clacu06g0744 Cmu06g0727 Cre06g1504 . . . . . Csa02g01023 . . . . . . . . . . . . . Cma08g01056 Cma17g00131 Car08g00932 Car17g00117 Cpe12g00115 Cpe17g00220 . . . . . . . . . . . . . . Lsi09g01191 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007728 1 2 1 1 1 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01023 Csa_Chr02 FPKM 14.698727 15.151052 8.449114 9.173554 13.966368 15.146964 16.300745 10.296304 8.760168 8.677958