Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01043 ATGAGCACGCATGGTTGCTCAAAACAATACAGTAGAAGGAGTAAAAAGCAGACTCGGAGCAATTCTGATGATGAAAGTGCAGCTCGGACTAGGCCATTCAGCTTTGAAGATATTATGCTTAGAAGGAAGACTAAAGGGTCAGCTGCTACGGTTGAGGTGGATGCCACAAGTACTGATAATCGGGCATCTGAAAGAATTTTTCGTCACAGTAAAGGTTCTTCCCTTGATGTGCAAAATCTCTCATTGGAGGAGGAATCAGCCAAAGATAGTTCAAGAAGGAAAAAAGAGGAGACAGTGTTGAAGAACAATATGGTGGTTAGGAGTGATAGAAATAATTATGAATCTGGATTGTCACTGATGAGTAAACTTAAACACGACAGGAATGAAAATGATGAAAGACAGAAATATGGCCAGGAAAGTCTTGGTTGGGGAAAAAATGACCAGAGTTGTAGGATTGATATTGAAACTGAAACTGCAAAGAGGCATTCAAGAGATACAGCTTGCAAGGATAGACGTCAAGATCATAGTAGGGGGGAATCTGAGAAAGAAAGCAAGAGAAAACCTCAAAATGGTGAAGATGACAGGAATAGAGACAGTAAGAGAAAATCTCAAAATGTTGACGATGAAATCAACAAAGACGGTAAGAGAAAATCTCAAAATGGTGATGATGACAAGAATAGAGTTAGTAAGAGAAAATCTCAAAATGGCGATGATGACAGGAATAGAGATAGTAAGAGAAAATCTCAAAATGGTGATGATGACAGGAATAGAGACAGTAAGAGAAAATCTCAAAATGGTGATGATGACAGGAACAGAGGCAGTAAGAGAAAATCTCAAAATGGTGAAGATGACAGGAACAGAGGCAGTAAGAGAAAATCTCAAAATGGTGATGATGAAAGGAACAGAGACAGTAAAAGAAAATCTCAAAATGGTGATGATGACAGGAATAGAGACAGTAAGAGAAAATCTCAAAATGGTGATGATGACAGGAATAGAGACAAGTACATTGCAAAGAAACATGATCATGGGAAACACCATGACCTAGAAAATAGAGAAAGAAAGGAAGCTGTAGTATCATTGACTTCACGTTATGAAGATTCTAGATTGAAACGAAGACAGAAAAGAAGCCCAGATCGTGAAAGTAAACATAGAAGATCTGTTTCACTTTCTCCAAGGTCACACAAGCACTCAACTAAGTTAGCTAGGCAGAAGGAGTTGCCTTTAGAGTCTCATGTGAAGAAGTCTGGGAGATGGCGTTCTGATAGCGAAAGAACGGGGGATTTTACCAACACTTCCAATAGCCAATACCGGCGGCATTCTGGGTCAACTAGTGGTCTTGGTGGCTATTCACCTAGAAAGAGAAGAACTGAATCTGCTGTCAAGACTCCATCACCTCTTCGAACACCCGAGGAGAAAAATGAAGTGTTGGATCTTCCTCCGACAGAAAAGGTTGGATTATTTTCTGGCTCAGTTGCTTCCAACTTTCCACCGTCAAATCCTACTGTTTCATTGGGCATTAGTAATGATCAATCTGGTGGTGCATTCTTTTCTTCTGCAATGGGGAAATCTCTATCAGTGGTTTCTTCAAATAATATAGCGATGAAGACAAAGGTTTCTCTTGATTTGGTTCAGCTTACCCAAGCTACTCGGCCAATGAGGAGGCTTTATATTGAAAACTTACCACATTCTGCATCTGAGAAAGCAATCATTGATTGCCTGAATGGTTTTCTTATGTCTTCAGGTGTTAATCACATCGAAGGAACCCAGCCATGTATTAGTTGTATTATACACAAAGATAGGGGTCAAGCTCTTGTCGAATTTCTGACACCTGAGGATGCTTCAGCAGCTCTTTTGTTTGATGGAAGTGACTTCTCTGGCTCCACTCTAAAGATTCGGCGACCAAAAGACTATATCGAAACTGTAACTGGTGACCTGGACAAGTCGATGCCGGTGGTAAATAAAATAAGTGATGTTGTTGAGGACTCACCAAATAAGATTATCGTTGCTGGGATCTCAAATAGATTATCGTCCGAAATGCTTAGGGATGTTGTTACTGCATTTGGACGATTGAAGGCCTATCACTTTGAGATCAACGATGATCTTAATGGACCTTGTGCTTTTCTGGAGTACGTTGACGAATCAGTTGTGTCCAAAGCTTGTGCTGGTCTGAATGGTATGAAGATTGGAGGGCAAGTACTAAAAGTATTTCCAGCTGTTCCTTTTCCTTTAACGGAACGTACTGGATGTCAACCATGTTATGGGATCCCAGAGCATGTAAAACCTCTCCTTCAACGGCCTTCAGTAGTGTTAAAAATTAACAATGTGTTTAATGCAGATGTCCTTCCTGTACTCTCTGAGTCAGATATTGATGAAGTTCTTGAAGATATTCGGTTTGAATGTGCTAGGTTTGGGACAGTTAAATCTGTGAATTTTGTAAAGCCATGCATCAGTGCTGAAGAAGAATACAAGCAAATTAGTGATATCACGGACGTTGATATCAAACATGAGATTCAAGAGAACAGCACGACGGTGATTTCGAGAAACAGTAATGATCTTGAAGATAACAACGCTAACCTTGATAACTGCCCCAGTGATTCCAATCAGAAGCAGGCTAATTGCCCTGACAATGGTAGGCATCAAGACGAAGCTGTGGAGGACAAATTGTGTCAAATGGGTAATACTGATGCTACATGTTTTGAGGTTGCAGATTGTGAGAATGCTTCAGAAAGAACCGGTCACGTACTCTCTGAACAACGAAGCAGCCCGGAAAATGATTTTCAGGATGCGAAAGTAACCGAAATAATTGAAACTGGGTTGGATAAAAAATTGGTGTGTGTAGAAGCTTCATCATCTATGATGGCTGATAATGAGAAGAAATCTCTAAATGGATTGGATCCTGTGGTGAGAATAGCTTCCAATGCAGTTGAGAAAAGCGAAAAGAAGGATCCTGATAATAATCAGGAGAGTTTATTTGTGTTGGGGAGTGTCTTTGTTGAGTTTGGTAGAATAGAAGCCTCATGTATGGCTGCACATTCTTTACATGGTAGAATTTATGATGGGCAAGAGATTAGCATCGAGTACATTCCCCATGGTCTCTATCGGAAGAGGTTTCCTAAATGA 3120 40.29 MSTHGCSKQYSRRSKKQTRSNSDDESAARTRPFSFEDIMLRRKTKGSAATVEVDATSTDNRASERIFRHSKGSSLDVQNLSLEEESAKDSSRRKKEETVLKNNMVVRSDRNNYESGLSLMSKLKHDRNENDERQKYGQESLGWGKNDQSCRIDIETETAKRHSRDTACKDRRQDHSRGESEKESKRKPQNGEDDRNRDSKRKSQNVDDEINKDGKRKSQNGDDDKNRVSKRKSQNGDDDRNRDSKRKSQNGDDDRNRDSKRKSQNGDDDRNRGSKRKSQNGEDDRNRGSKRKSQNGDDERNRDSKRKSQNGDDDRNRDSKRKSQNGDDDRNRDKYIAKKHDHGKHHDLENRERKEAVVSLTSRYEDSRLKRRQKRSPDRESKHRRSVSLSPRSHKHSTKLARQKELPLESHVKKSGRWRSDSERTGDFTNTSNSQYRRHSGSTSGLGGYSPRKRRTESAVKTPSPLRTPEEKNEVLDLPPTEKVGLFSGSVASNFPPSNPTVSLGISNDQSGGAFFSSAMGKSLSVVSSNNIAMKTKVSLDLVQLTQATRPMRRLYIENLPHSASEKAIIDCLNGFLMSSGVNHIEGTQPCISCIIHKDRGQALVEFLTPEDASAALLFDGSDFSGSTLKIRRPKDYIETVTGDLDKSMPVVNKISDVVEDSPNKIIVAGISNRLSSEMLRDVVTAFGRLKAYHFEINDDLNGPCAFLEYVDESVVSKACAGLNGMKIGGQVLKVFPAVPFPLTERTGCQPCYGIPEHVKPLLQRPSVVLKINNVFNADVLPVLSESDIDEVLEDIRFECARFGTVKSVNFVKPCISAEEEYKQISDITDVDIKHEIQENSTTVISRNSNDLEDNNANLDNCPSDSNQKQANCPDNGRHQDEAVEDKLCQMGNTDATCFEVADCENASERTGHVLSEQRSSPENDFQDAKVTEIIETGLDKKLVCVEASSSMMADNEKKSLNGLDPVVRIASNAVEKSEKKDPDNNQESLFVLGSVFVEFGRIEASCMAAHSLHGRIYDGQEISIEYIPHGLYRKRFPK* 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10136203 10146416 + CsaV3_2G012590.1 Csa02g01043 519100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01043 1039 MobiDBLite consensus disorder prediction 1 473 - -
Csa02g01043 1039 PANTHER RNA-BINDING PROTEIN 1 248 - -
Csa02g01043 1039 PANTHER RNA-BINDING PROTEIN 255 1036 - -
Csa02g01043 1039 SUPERFAMILY RNA-binding domain, RBD 756 1036 IPR035979 GO:0003676
Csa02g01043 1039 SMART rrm1_1 665 736 IPR000504 GO:0003723
Csa02g01043 1039 SMART rrm1_1 554 632 IPR000504 GO:0003723
Csa02g01043 1039 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 248 - -
Csa02g01043 1039 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 255 1036 - -
Csa02g01043 1039 MobiDBLite consensus disorder prediction 842 879 - -
Csa02g01043 1039 MobiDBLite consensus disorder prediction 842 874 - -
Csa02g01043 1039 SUPERFAMILY RNA-binding domain, RBD 540 636 IPR035979 GO:0003676
Csa02g01043 1039 MobiDBLite consensus disorder prediction 104 118 - -
Csa02g01043 1039 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 553 636 IPR000504 GO:0003723
Csa02g01043 1039 Gene3D - 764 858 IPR012677 -
Csa02g01043 1039 MobiDBLite consensus disorder prediction 150 387 - -
Csa02g01043 1039 Gene3D - 925 1039 IPR012677 -
Csa02g01043 1039 Gene3D - 553 735 IPR012677 -
Csa02g01043 1039 MobiDBLite consensus disorder prediction 425 449 - -
Csa02g01043 1039 MobiDBLite consensus disorder prediction 82 103 - -
Csa02g01043 1039 MobiDBLite consensus disorder prediction 16 43 - -
Csa02g01043 1039 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 666 734 IPR000504 GO:0003723
Csa02g01043 1039 MobiDBLite consensus disorder prediction 400 424 - -
Csa02g01043 1039 MobiDBLite consensus disorder prediction 120 138 - -
Csa02g01043 1039 SUPERFAMILY RNA-binding domain, RBD 658 746 IPR035979 GO:0003676
Csa02g01043 1039 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 664 740 IPR000504 GO:0003723
Csa02g01043 1039 Gene3D - 655 713 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01043 K12837 U2AF2; splicing factor U2AF 65 kDa subunit - csv:101213128 2054.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01043 Csa-Chr2:10136203 Csa06g00313 Csa-Chr6:2303174 2.17E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g750 Blo01g00297 . . . . . . Bma05g01247 Cmo08g01045 Cmo17g00150 . . . . . . . . . . . . . . Cla06g00680 Cam06g0733 Cec06g0740 Cco06g0749 Clacu06g0725 Cmu06g0709 Cre06g1483 . . . . . Csa02g01043 Chy05g00306 . . . . . Bpe05g01101 . . . Sed04g2009 . . Cma08g01072 Cma17g00150 Car08g00945 Car17g00132 Cpe12g00127 Cpe17g00206 Bhi12g01590 Tan06g2386 Cmetu05g1606 . . . Lcy13g0392 . . . . . . . Lsi09g01218 . . Cme05g00588
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008034 0 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 2 1 1 2 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01043 Csa_Chr02 FPKM 14.573456 14.384017 5.222493 5.938344 5.168088 4.69294 4.717416 9.753236 10.662689 10.708594