Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01048 ATGGCTCCAACTCCGTCTTCTAAATCAAATCAAGGTCACATGACCCAACTGAGAACTCCTCAAGCGAAGCGCCTCAATTTCAACACCCCTAGATCACATTCATCCCCTTTTCCCAATTCCGCCATTAAGGACTCCCAGTCCGAGCATCCCGTTGAAGTAATCGGCCGGATCCGAGACTATCCCGACCGGAAAGATAAACCGGTTTCCATTCTGCAGATAAATCCCGATGGACAGAACGTTCGGGTTCGGGCTGATTTCGGGTACAGGGATTTCAGTCTCGATGGGATTTCGCTGTCGGAAGAGGAAGATCTTGACTCGTTTTACAAGAAGTTCGTGGAAGCCAGGATTCATGGTGTTAAGTTGGGTGAGAAATGTACGATTATGATGTATGGACCCACCGGTGCCGGCAAGAGTCACACGATGTTTGGCTGTTCGAAGCAGCCGGGTATTGTGTATAAGTCGCTGAAGGACATTTTAGGCGACGGAGAAAGTGAAGCTGCCGCTACTGCCGGAGTCGATGGTGGCGAGCGGCTGAATGTTGGGATGTTTGTACAAGTTACGGTTCTGGAGATTTATAATGAAGAAATATATGATCTTCTTTCGAGTAATTCTGGTGGAGGACTAGGGCTTGGTTGGCCTAAGGGAAGTGCCTCTAAGGTGAAGCTTGAAGTGATGGGGAAGAAGGCAAAAAATGCCACTTATCTATCTGGAAATGAAGCAGGAAAAATTTCCAAAGAGATTCAGAAAGTGGAGAAAAGAAGGATAGTTAAAAGTACACTCTGCAATGAGAGAAGTTCTAGAAGCCATTGCATGATAATCCTTGACGTGCCGACTGTCGGTGGACGCCTGATGCTCGTGGATATGGCTGGTTCTGAAAATATAGAGCAAGCTGGACAAGTTGGATTTGAGGCAAAAATGCAGACGGCAAAGATTAATCAAGGTAATATCGCATTGAAAAGAGTGGTTGAATCAATTGCCAATGGTGATTCTCATGTGCCTTTCAGAGACAGTAAATTGACCATGCTTCTGCAGGATTCTTTTGAAGATGATAAATCCAAAATTCTGATGATTCTGTGTGCTAGCCCTGATCCAAAAGAATTACACAAGACAATCTCTACTCTCGAATACGGTGCTAAAGCCAAATGCATTGTCCGTGGTCCTCATACACCAACAAAGGATAAATGTGGTGCTGATGATTCTGCTTCTGCTGTTATTCTGGGTTCCAGAATTGCGGCCATGGACGATTTCATCTTCAAGTTACAGAAGGAGAACAAACTTAGAGAGAAAGAGCGAAATGAGGCGCATAGAGAACTCATGAAGAAAGAAGAAGAGGTATCAGCATTGAGAGTCAAGCTCGAGAAAGCGGGTTCGAAAGGATCAAACGTGAGTGAGGAAGAGATCAATTTGAAGGTGAATGAGAGAACGCAACTTCTGAAACTTGAGTTGGAAAGGAAGCTGGAGGAGTGCCAGAAAATGGCCAATGAATTTGTTGAATTGGAAAGGAGAAGGATGGAAGAAAAGATACTGCAGCAGCAACAAGAAGTCGAAATGTTGAGGCGTCGGTTGGAAGAGATCGAATCCGAGCTATTGAATTCAAGGGATGCTACAAGCATTGATGTAAACAAATCAAGGGACATGGATGGCTGCAGGCTAGCTAAAAGACTCTTAGGAGTATATGCTAGTGCAGATGCAGGGATGGTGAAGTCCATGGACTTGGACATGGATGATCAAGAACCAATTCGTGAAGTAAAACTCATCGGCGGTGTGGATTATCAACCAACTACCAACAACGGTATCCAAAGTCTACTAGACAAAGTGAACGAGAAAGTTGATCATGATGTATTTTCATCACGGTTTGGGGATGGGGATAGAGTATGCCTAAGTACTGTATTCGAGGAAGAAGAAGCAGAAGAGGAAGAGGAGAAGGAAGTTATAGAAGAAAAGAGAGTAGTGTGTACAGTCGAAGGACTCACAGAACAACAACTAACACCAAACGTTGTGATCCGGAGTCAGAACAAAGAAGATTTTATCAAGGAGAGATCAGAGATCGGCATCGGACTGTTAAACGACAACGAAAGCTCCAAGGACACCGCATTCTCCAGAAAGTTGAGAATTCAAAATATATTTACTCTTTGTGGAAACCATAGAGAGCTTTCTCAACAAATTGCCCCAATACTACCTGAGAAGAAGAGATCTGATGATGCTGAAAATCAGCACCCATCATCTCCATTGAAGACAATTGGAGAAGTTCAAAAGGCTACATCAGATCATTACACTCAGATCCTTTCAGACCTGACGAACCAGAATGGAGCTGTATTGACAGAAAATGAAGAGACAATGCAGCAGCCTGTGAAGCTGGTACAAGTAAAGGGAGGATTAAACAGCCCAAGTGTTATACCAATGAGTCCAATTCTTCCATTGGGCTCAAAGGAGAACAAGCTACCGGGCACGCCGAACATGGTATCGCAGCAAAGTGATGGGCTATCACCGAGGCTCAGCGCTACGCCGTTCATCACAGTAAGAAGACACTGA 2532 44.43 MAPTPSSKSNQGHMTQLRTPQAKRLNFNTPRSHSSPFPNSAIKDSQSEHPVEVIGRIRDYPDRKDKPVSILQINPDGQNVRVRADFGYRDFSLDGISLSEEEDLDSFYKKFVEARIHGVKLGEKCTIMMYGPTGAGKSHTMFGCSKQPGIVYKSLKDILGDGESEAAATAGVDGGERLNVGMFVQVTVLEIYNEEIYDLLSSNSGGGLGLGWPKGSASKVKLEVMGKKAKNATYLSGNEAGKISKEIQKVEKRRIVKSTLCNERSSRSHCMIILDVPTVGGRLMLVDMAGSENIEQAGQVGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMILCASPDPKELHKTISTLEYGAKAKCIVRGPHTPTKDKCGADDSASAVILGSRIAAMDDFIFKLQKENKLREKERNEAHRELMKKEEEVSALRVKLEKAGSKGSNVSEEEINLKVNERTQLLKLELERKLEECQKMANEFVELERRRMEEKILQQQQEVEMLRRRLEEIESELLNSRDATSIDVNKSRDMDGCRLAKRLLGVYASADAGMVKSMDLDMDDQEPIREVKLIGGVDYQPTTNNGIQSLLDKVNEKVDHDVFSSRFGDGDRVCLSTVFEEEEAEEEEEKEVIEEKRVVCTVEGLTEQQLTPNVVIRSQNKEDFIKERSEIGIGLLNDNESSKDTAFSRKLRIQNIFTLCGNHRELSQQIAPILPEKKRSDDAENQHPSSPLKTIGEVQKATSDHYTQILSDLTNQNGAVLTENEETMQQPVKLVQVKGGLNSPSVIPMSPILPLGSKENKLPGTPNMVSQQSDGLSPRLSATPFITVRRH* 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10183474 10187261 + CsaV3_2G012640.1 Csa02g01048 519105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01048 843 Coils Coil 628 648 - -
Csa02g01048 843 PANTHER KINESIN-LIKE PROTEIN KIN-10A 21 767 - -
Csa02g01048 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 390 IPR027417 -
Csa02g01048 843 MobiDBLite consensus disorder prediction 1 48 - -
Csa02g01048 843 SMART kinesin_4 48 391 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g01048 843 PANTHER KINESIN-RELATED 21 767 IPR027640 GO:0003777|GO:0007018
Csa02g01048 843 PRINTS Kinesin heavy chain signature 122 143 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g01048 843 PRINTS Kinesin heavy chain signature 259 276 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g01048 843 PRINTS Kinesin heavy chain signature 282 300 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g01048 843 PRINTS Kinesin heavy chain signature 332 353 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g01048 843 Coils Coil 424 458 - -
Csa02g01048 843 Pfam Kinesin motor domain 89 383 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g01048 843 Gene3D Kinesin motor domain 29 386 IPR036961 -
Csa02g01048 843 MobiDBLite consensus disorder prediction 1 46 - -
Csa02g01048 843 Coils Coil 472 535 - -
Csa02g01048 843 MobiDBLite consensus disorder prediction 820 843 - -
Csa02g01048 843 ProSiteProfiles Kinesin motor domain profile. 50 383 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01048 - - K10398 csv:101206310 1578.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01048 Csa-Chr2:10183474 Csa01g01132 Csa-Chr1:6979362 8.35E-32 dispersed
Csa02g01048 Csa-Chr2:10183474 Csa04g01460 Csa-Chr4:14448096 1.16E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g735 . . . . . Bpe14g01265 . . Cmo08g01050 Cmo17g00152 . . . . . . . . . . . . . . . . . . . . . Cone14ag0161 Cone15ag0172 . Cone4ag0340 . Csa02g01048 . . Blo02g00696 . . Bda13g00053 . . . . Sed09g0662 . . Cma08g01075 Cma17g00153 Car08g00947 Car17g00135 Cpe12g00130 Cpe17g00203 Bhi12g01600 Tan06g2394 Cmetu05g0124 . . . Lcy13g0389 . . . . . . . . . . Cme05g00583
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006035 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01048 Csa_Chr02 FPKM 41.894482 43.39098 31.033007 32.767151 47.467445 43.52626 48.681759 35.167736 33.965122 34.421272