Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01051 ATGAAGTCTTCCACTGTGCTTGATTCGGCTACTTTTCAGCTCACACCTACTCGAACCAGGTGTGATTTGATTATATCTGCAAATGGAAAGTCTGAGAAGATAGCTTCGGGTTTATTGAATCCTTTTCTTGCTCATTTGAAGATTGCACAAGAACAGATGGCCAGAGGTGGTTATTCCATCACTCTCGAGCCAGACCCTCGCAGTGGTAGTACATGGTTCACAAAGGGTACCATGGAGAGGTTTGTTCGATTTGTATGCACCCCTCAAATCTTGGAACGTGTGTACACTATTGAATCAGAGATCTTACAGATTGAGGAGGCAATTGTGATTCAAGGAAACAATGATACGAGGCCAAATGTTGTGGATGACAAGCAAGGAAAGCCTACAAAGTCTCCCGAAAGCACCACCGAAGGTTCTAAAATCAATGGAGCAAGCAAGTCTCTTCTGGATGGTAACGAGGAGAAAGCAATTGTTTTGTACAAGCCAGATGCAAACTCACTGGAGCCCAATGGACACATGGTGTCAGAGGAGAACTCAAAAGCTCAACTTCTTAAAGTACTTGAGACACGCAAAACTATGCTGCAAAAGGAGCAAGGAATGGCTTTTGCTCGAGCTGTTGCTGCTGGTTTTGACATTGATCGGATGCCACCATTGATATCGTTTGCAAACAGCTTTGGAGCCTCTCGGTTGATGGATGCATGCTTAAAATTCAAAGAACTATGGAAAAGAAAGCATGAAAGTGGCCAATGGCTTGAAATTGAAGCAGCAGAAGCGCTGTCCAGCCGGCCAGACTTTTCCCCTTCTGTGAATACGTCAGGCATTATACTTACAAGTTTGACTGACAAACAGACAGAATCTAGAGAAACATGGTCTGAATCTCCAAACGAACCATCTTCAACAAATAAGGGGAATGCAATTACAGATGGTAATGCACCTATGATGTACCAGTCACCGCCAGGCCACCAAGAGTATCTTCAAGGACAGTATCCTCATCATATGTACCCTCCCTGGCCCATCAATTCTCCTCCAGGTGCATTACCTGTCTTTCAAGGATACCCCATGCAAGGAATGCCTTACTATCAGAACTATGCAGGCGGCAGCCCTTACTTTCATCCACATTATCCAGTAACGGAGGATCCTCGTTTGGGTGATGGTAGAAGAATGGGAGGCAAAAGGCACTCCATGGATGGTGGAGATAACTCAACTGAACCAGAAACCTGGGAGACAAATGCTTCAAAGGCAAGAGTACCTGATGATGCTGAATCAGAGGAAGAGGCGTCAGAAGATCAGAGAAAATCTGGTTACTCAGGTAAAAAGAAATCAGGTGTGGTTGTCATCCGCAACATCAACTACATTGCTTCGAAGCGGCACAACTCATCAGGCAGTGAAACAGATTCACCTTCCGAGAGTGGTAGTGGGGAAGATAGAGATTTGCAGGCTATTAGTCCAGAAATTAAACACAAGAAATCCACTAGATCATCAAGAAGCAAAGGAAAACATCTAAATTTTGGAGATCAATCAAATACTCCAGCGAAAACTGTTTCACCAGAAGCAGATGGACATTGGCAGGCATTCCAAAGCCTTTTACTTCGAGATGCTGATGCAGAAAAACATCATGCTGATCAAAGCCTGTTTACTATGGAGCGTGAGACCAAGCAGAAAAGGCGACAAAATAAAGTTGGTGATGATCCACTAATTGCTCAGGGATCAAACAGAGATGAAATCCAAGAAAATGGTGCTACAGACATTGATAGAATTGGTGGTAGAATCAACCGTGTGTCAAGGGCATCAAATGATGAATTATTAACTTCTCGAAGAGATGGTATATCTGGGGATGGTCATTTGAATGTGCAGGCTAGAGAACTAGATGGAGGAAGAAATGGCTACAGGAGGCCTGGTAGTGATGATTTTATGGTTTATGGTCAAAAGGGTCAAACTCTCTCTAACGCCCACTCAGATCCATTAGCTGTAAGCGGCTTGGATATTAGAAAAACAAGCTATGATAAAAAAAATTCAAATAATTTGGATGGTGATTCTTACATAGTTCCATTAAGATCGATGTCAATGGATGCAGTTGGAAAGGATGGTAGAACTGCTGTTGACATGGATTCTGAGTTTCCATCTTCAAATCATAAGGCAGAAAATTTGTCCAATAGAATTGCTACCTACGAGCCAGATGTACTGAATCTGATGCCAAAACGTGAAACAGAAAATGAACCTGCTGGTTATGATCCTGCTTTAGAATATGAAATGCAGGTTAATGCTGGACGCATGCCAGCAGTGGCTAAGAAGAAGGAAGTGGTAACTGATGTTAAAAAAGGAGTTAAAAGGTTGGACAATGATCGTAAGCCAAAAATCACTCCAGATAGGAAAGCTGGGGGGCCAATAAGGAAGGGAAAACCTTCTAAGTTGAGTCCTCTAGATGAAGCACGAGCACGTGCTGAAAAGCTAAGAACTTATAAAGCTGATCTCCAGAAATTGAAGAAGGAGAAGGAGGAGGAAGCAATAAAAAGAATAGAAGCTTTGAAGCTAGAGAGGCAGAAGAGAATTGCAGCAAGGGGTAACAATAGCAACTCCGCTCAGTCGTCATTGCCCTCTCAGCAAACTAGAAAGCTCCTGCCAACAAAAATGTCACCCAACTCTCAGAAAGGATCAAAATTTAGTGATTCAGATCCAGGACCATCATCTCCTCTGCAAAGGTTCCCCATCAGAACGCCTTCAATTGGTTCCAACGATTCCAACAAAACTACAAAACCCAGCAGATTGAACGGTGGAAATCACTCAGCTGGAAACCGGTTAATTCAATCTGTACCTTCATTAACTAAACTAAAGAAAGAGAACAGTGATGCCACAAATGACAAAAAAGTATCCATGGCTCGTATCAGAAGATTATCAGAGCCAAAAATGAGTATCAGCAATCATTCTTCTTCTACCAAGACACGAAGCACTGAGCCAGCTATAAAGGCAAAAGTAACTAATGAGACTGAGAGCAAAAAGAAGATATCTGCTATAATGAATTTGGATAAGAGCAAGGCTGCAACTCTTCCGGAACTTAAAATTAGGACGACCAAGGGACCTGGTGCTACAATTGGCAACTCAATAGCACAAGAAACAATGCAGAGTGTGAATCATCCATCAGTTTCTGAGGGTGCTTGTGCTTCCATGGAAAGGATTACTGCCAAAGTCACACATCATAATGAACTGGATGACAACTCTGTTGTTGAAAAGACCGTTGTAATGCTTGAATGTGAGAAGCCCTCCATCCCTACAGTTCCTGCTTCTAAAGACAATCTTAATCCCCAAATTAAAGTGTCCGGTGTCAATAGGGAACCCATCAAGCACCAACCACAGAGTCAGTTGAGTTCTCATGAGATTTCATTATCCTGCCCTCCTGAAAGGTGA 3402 42.74 MKSSTVLDSATFQLTPTRTRCDLIISANGKSEKIASGLLNPFLAHLKIAQEQMARGGYSITLEPDPRSGSTWFTKGTMERFVRFVCTPQILERVYTIESEILQIEEAIVIQGNNDTRPNVVDDKQGKPTKSPESTTEGSKINGASKSLLDGNEEKAIVLYKPDANSLEPNGHMVSEENSKAQLLKVLETRKTMLQKEQGMAFARAVAAGFDIDRMPPLISFANSFGASRLMDACLKFKELWKRKHESGQWLEIEAAEALSSRPDFSPSVNTSGIILTSLTDKQTESRETWSESPNEPSSTNKGNAITDGNAPMMYQSPPGHQEYLQGQYPHHMYPPWPINSPPGALPVFQGYPMQGMPYYQNYAGGSPYFHPHYPVTEDPRLGDGRRMGGKRHSMDGGDNSTEPETWETNASKARVPDDAESEEEASEDQRKSGYSGKKKSGVVVIRNINYIASKRHNSSGSETDSPSESGSGEDRDLQAISPEIKHKKSTRSSRSKGKHLNFGDQSNTPAKTVSPEADGHWQAFQSLLLRDADAEKHHADQSLFTMERETKQKRRQNKVGDDPLIAQGSNRDEIQENGATDIDRIGGRINRVSRASNDELLTSRRDGISGDGHLNVQARELDGGRNGYRRPGSDDFMVYGQKGQTLSNAHSDPLAVSGLDIRKTSYDKKNSNNLDGDSYIVPLRSMSMDAVGKDGRTAVDMDSEFPSSNHKAENLSNRIATYEPDVLNLMPKRETENEPAGYDPALEYEMQVNAGRMPAVAKKKEVVTDVKKGVKRLDNDRKPKITPDRKAGGPIRKGKPSKLSPLDEARARAEKLRTYKADLQKLKKEKEEEAIKRIEALKLERQKRIAARGNNSNSAQSSLPSQQTRKLLPTKMSPNSQKGSKFSDSDPGPSSPLQRFPIRTPSIGSNDSNKTTKPSRLNGGNHSAGNRLIQSVPSLTKLKKENSDATNDKKVSMARIRRLSEPKMSISNHSSSTKTRSTEPAIKAKVTNETESKKKISAIMNLDKSKAATLPELKIRTTKGPGATIGNSIAQETMQSVNHPSVSEGACASMERITAKVTHHNELDDNSVVEKTVVMLECEKPSIPTVPASKDNLNPQIKVSGVNREPIKHQPQSQLSSHEISLSCPPER* 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10192850 10204168 - CsaV3_2G012670.1 Csa02g01051 519108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01051 1133 MobiDBLite consensus disorder prediction 851 945 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 699 720 - -
Csa02g01051 1133 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 1097 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 773 809 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 533 561 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 374 440 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 1087 1133 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 946 962 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 533 581 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 452 468 - -
Csa02g01051 1133 Coils Coil 807 847 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 377 399 - -
Csa02g01051 1133 PANTHER COP1-INTERACTING PROTEIN-LIKE PROTEIN 1 1097 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 1111 1126 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 278 311 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 115 146 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 593 634 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 968 990 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 500 514 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 850 997 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 412 436 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 278 327 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 703 717 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 452 520 - -
Csa02g01051 1133 MobiDBLite consensus disorder prediction 131 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01051 - - - csv:101205835 2180.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01051 Csa-Chr2:10192850 Csa04g02365 Csa-Chr4:24021808 2.89E-86 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g727 Blo01g00089 Blo12g00369 Bda03g00841 Bda08g00276 . . Bma04g00739 . Cmo08g01052 Cmo17g00154 . . . . . . . . . . . . . . Cla06g00675 Cam06g0725 Cec06g0732 Cco06g0741 Clacu06g0716 Cmu06g0701 Cre06g1472 Cone14ag0156 Cone15ag0168 . . . Csa02g01051 Chy05g00312 . . . . . Bpe05g00856 . . . . . . Cma08g01077 Cma17g00155 Car08g00950 Car17g00138 Cpe12g00133 Cpe17g00200 Bhi12g01604 Tan06g2399 . . . . Lcy13g0386 . . . . . . . Lsi09g01225 . . Cme05g00580
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003371 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 3 1 6 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01051 Csa_Chr02 FPKM 12.057228 12.668156 13.428721 13.013317 18.294399 17.104492 17.730999 13.152843 13.07838 13.040833