Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g01055 | ATGGAAGCTACTAGGCGTTGGTTTAATAAGTTTAGATCCAAAGACAAGCCAAAGCCCTCAACAAATAAGGAGAGTACAGGCAATGCAAGAGATCCTTCACGAGCACCAACTAGTGAAGATGTACCCTCAAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAGCAGTATATAGAAAATCATTACAAGAAACAGATGAAGAGCTTGGAAGAAAGGAGGGAGAGGCGTCATGTACTAGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAGCAAAGCAACCTGCTGAAGCATCTGGAGAAGAAGGAAACAGAGTACATGCGTCTTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTGGTCATGTATATGCCATGAAGAAGCTTAAAAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACACGTGAAAGCTGAAAGGAACCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGCTTTACTGCTCTTTCCAAGATGAGGAGTATTTATATCTTATCATGGAATACTTACCTGGTGGAGATATGATGACTTTGCTGATGAGAAAAGATACTCTAACTGAAGATGAGGCTCGATTTTATGTTGGCGAAACAGTCTTAGCTATCGAGTCAATCCATAAACATAACTATATTCATAGAGATATCAAGCCGGATAACTTACTTCTTGACAAGGATGGCCATATGAAATTATCGGATTTTGGATTATGTAAACCATTAGATTGTAGCAACCTCCAAGAAAAGGATTTTTCCCAGGGAAGTAACCTCAGTGGTGCCCTTCAAAGTGACGGGCGTCCTGTGGCATCAAAACGCACCCAACAGGAACAACTACAGCATTGGCAAAAAAATAGGCGGTATCTTGCTTATTCTACGGTTGGAACTCCTGATTATATTGCCCCAGAAGTTCTGCTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTATGAAATGCTTGTGGGATTTCCACCGTTTTACTCAGATGAGCCAATGTCTACTTGTCGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCAGAGGAAGCAAAACTCTCTCCAGAAGCCAAGGATCTAATTAGTAAACTCTTATGCAACGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCGCACCCATGGTTCAAGGGCATTGAGTGGGATAAGTTGTATCAAATGAAAGCTGCATTCATTCCTGAGGTCAATGATGAGTTGGATACTCAAAATTTTGAGAAGTTTGAAGAGACTGAAAACGCACTTCAAACTTCATCAAAATCAGGTCCATGGAGAAAGATGTTGTCATCGAAGGATATCAATTTTGTAGGTTATACGTACAAAAACTTTGAGATCATTGATGATAATCAATTGCCCGGAATCGCCGAATTGAAGAAGAAGAGCGCAAAATCTAAAAGACCTTCCATCAAATCACTCTTTGATAACGAATCAGCAATGGCTAATCAACCCGTTCAAGGAAGCTTTCTGAAACTCTTGCCTCCCCAGCTAGAAGTCCCCGAGAAACCAATGAACACAAATGAGAAGCATTCATGA | 1656 | 41.36 | MEATRRWFNKFRSKDKPKPSTNKESTGNARDPSRAPTSEDVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGSNLSGALQSDGRPVASKRTQQEQLQHWQKNRRYLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENALQTSSKSGPWRKMLSSKDINFVGYTYKNFEIIDDNQLPGIAELKKKSAKSKRPSIKSLFDNESAMANQPVQGSFLKLLPPQLEVPEKPMNTNEKHS* | 552 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 10236107 | 10243761 | - | CsaV3_2G012710.1 | Csa02g01055 | 519112 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g01055 | 551 | MobiDBLite | consensus disorder prediction | 22 | 49 | - | - | |
Csa02g01055 | 551 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 419 | 491 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Csa02g01055 | 551 | Pfam | Protein kinase domain | 121 | 418 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa02g01055 | 551 | SUPERFAMILY | Protein kinase-like (PK-like) | 94 | 471 | IPR011009 | - | |
Csa02g01055 | 551 | SMART | pkinase_C_6 | 419 | 483 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Csa02g01055 | 551 | Gene3D | Transferase(Phosphotransferase) domain 1 | 205 | 435 | - | - | |
Csa02g01055 | 551 | Pfam | Protein kinase C terminal domain | 437 | 481 | IPR017892 | GO:0004674|GO:0005524|GO:0006468 | |
Csa02g01055 | 551 | MobiDBLite | consensus disorder prediction | 532 | 551 | - | - | |
Csa02g01055 | 551 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 41 | 520 | - | - | |
Csa02g01055 | 551 | Gene3D | Phosphorylase Kinase; domain 1 | 109 | 204 | - | - | |
Csa02g01055 | 551 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Csa02g01055 | 551 | ProSitePatterns | Protein kinases ATP-binding region signature. | 125 | 148 | IPR017441 | GO:0005524 | |
Csa02g01055 | 551 | ProSiteProfiles | Protein kinase domain profile. | 119 | 418 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa02g01055 | 551 | Coils | Coil | 68 | 102 | - | - | |
Csa02g01055 | 551 | CDD | STKc_NDR_like | 117 | 482 | - | - | |
Csa02g01055 | 551 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 41 | 520 | - | - | |
Csa02g01055 | 551 | SMART | serkin_6 | 119 | 418 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa02g01055 | 551 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 238 | 250 | IPR008271 | GO:0004672|GO:0006468 | |
Csa02g01055 | 551 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01055 | Csa-Chr2:10236107 | Csa07g01616 | Csa-Chr7:16674560 | 0 | dispersed | |
Csa06g01632 | Csa-Chr6:14302753 | Csa02g01055 | Csa-Chr2:10236107 | 2.28E-34 | dispersed | |
Csa02g01055 | Csa-Chr2:10236107 | Csa01g02951 | Csa-Chr1:25888812 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77889 | PF00069 | Pkinase | 1.00E-65 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g01055 | K08790 | - | csv:101205120 | 1118.99 |