Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01055 ATGGAAGCTACTAGGCGTTGGTTTAATAAGTTTAGATCCAAAGACAAGCCAAAGCCCTCAACAAATAAGGAGAGTACAGGCAATGCAAGAGATCCTTCACGAGCACCAACTAGTGAAGATGTACCCTCAAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAGCAGTATATAGAAAATCATTACAAGAAACAGATGAAGAGCTTGGAAGAAAGGAGGGAGAGGCGTCATGTACTAGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAGCAAAGCAACCTGCTGAAGCATCTGGAGAAGAAGGAAACAGAGTACATGCGTCTTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTGGTCATGTATATGCCATGAAGAAGCTTAAAAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACACGTGAAAGCTGAAAGGAACCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGCTTTACTGCTCTTTCCAAGATGAGGAGTATTTATATCTTATCATGGAATACTTACCTGGTGGAGATATGATGACTTTGCTGATGAGAAAAGATACTCTAACTGAAGATGAGGCTCGATTTTATGTTGGCGAAACAGTCTTAGCTATCGAGTCAATCCATAAACATAACTATATTCATAGAGATATCAAGCCGGATAACTTACTTCTTGACAAGGATGGCCATATGAAATTATCGGATTTTGGATTATGTAAACCATTAGATTGTAGCAACCTCCAAGAAAAGGATTTTTCCCAGGGAAGTAACCTCAGTGGTGCCCTTCAAAGTGACGGGCGTCCTGTGGCATCAAAACGCACCCAACAGGAACAACTACAGCATTGGCAAAAAAATAGGCGGTATCTTGCTTATTCTACGGTTGGAACTCCTGATTATATTGCCCCAGAAGTTCTGCTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTATGAAATGCTTGTGGGATTTCCACCGTTTTACTCAGATGAGCCAATGTCTACTTGTCGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCAGAGGAAGCAAAACTCTCTCCAGAAGCCAAGGATCTAATTAGTAAACTCTTATGCAACGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCGCACCCATGGTTCAAGGGCATTGAGTGGGATAAGTTGTATCAAATGAAAGCTGCATTCATTCCTGAGGTCAATGATGAGTTGGATACTCAAAATTTTGAGAAGTTTGAAGAGACTGAAAACGCACTTCAAACTTCATCAAAATCAGGTCCATGGAGAAAGATGTTGTCATCGAAGGATATCAATTTTGTAGGTTATACGTACAAAAACTTTGAGATCATTGATGATAATCAATTGCCCGGAATCGCCGAATTGAAGAAGAAGAGCGCAAAATCTAAAAGACCTTCCATCAAATCACTCTTTGATAACGAATCAGCAATGGCTAATCAACCCGTTCAAGGAAGCTTTCTGAAACTCTTGCCTCCCCAGCTAGAAGTCCCCGAGAAACCAATGAACACAAATGAGAAGCATTCATGA 1656 41.36 MEATRRWFNKFRSKDKPKPSTNKESTGNARDPSRAPTSEDVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGSNLSGALQSDGRPVASKRTQQEQLQHWQKNRRYLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENALQTSSKSGPWRKMLSSKDINFVGYTYKNFEIIDDNQLPGIAELKKKSAKSKRPSIKSLFDNESAMANQPVQGSFLKLLPPQLEVPEKPMNTNEKHS* 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10236107 10243761 - CsaV3_2G012710.1 Csa02g01055 519112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01055 551 MobiDBLite consensus disorder prediction 22 49 - -
Csa02g01055 551 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Csa02g01055 551 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01055 551 SUPERFAMILY Protein kinase-like (PK-like) 94 471 IPR011009 -
Csa02g01055 551 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Csa02g01055 551 Gene3D Transferase(Phosphotransferase) domain 1 205 435 - -
Csa02g01055 551 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Csa02g01055 551 MobiDBLite consensus disorder prediction 532 551 - -
Csa02g01055 551 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 520 - -
Csa02g01055 551 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Csa02g01055 551 MobiDBLite consensus disorder prediction 1 21 - -
Csa02g01055 551 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Csa02g01055 551 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01055 551 Coils Coil 68 102 - -
Csa02g01055 551 CDD STKc_NDR_like 117 482 - -
Csa02g01055 551 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 41 520 - -
Csa02g01055 551 SMART serkin_6 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01055 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Csa02g01055 551 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01055 Csa-Chr2:10236107 Csa07g01616 Csa-Chr7:16674560 0 dispersed
Csa06g01632 Csa-Chr6:14302753 Csa02g01055 Csa-Chr2:10236107 2.28E-34 dispersed
Csa02g01055 Csa-Chr2:10236107 Csa01g02951 Csa-Chr1:25888812 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77889 PF00069 Pkinase 1.00E-65 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01055 K08790 - csv:101205120 1118.99