Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01063 GCCCATCATCAAGGATTTCTTCTGCACCACTCCCTATCATTTTCCACAAATTTCAGTACAAAAAGAAGAAATAAAGAAATCAAAGCTTCCATAGCCAAAAACTTAAAGATGAGTCAACAACAAGTTGGAGTTCTAAACGCACTCGATCTTGCAAAAACCCAATGGTACCATTTCACTGCAATCATCATCGCCGGAATGGGTTTCTTCACCGACGCTTACGATCTCTTTTGTATCTCCATCGTCACTAAGCTTCTCGGCCGAATCTATTACCATATTCCAAATGGCTCCAAACCCGGCTCCCTCCCTCCCAACATCGCTGCCGCCGTCAACGGCGTCGCCTTCTGCGGCACCCTCTCTGGCCAACTATTCTTTGGCTGGCTCGGAGACAAGCTCGGCCGTAAAAAAGTCTACGGCATTACCCTCATTCTCATGGTTGTTTGCTCCATCGCCTCCGGCCTCTCCTTCAGCCACTCCCCAAAATCCGTAATTGCCACACTTTGTTTCTTCCGTTTCTGGCTCGGCTTTGGCATCGGCGGCGACTACCCTCTCTCCGCCACGATCATGTCCGAATACGCCAACAAAAAAACCCGCGGCGCATTCATCGCCGCTGTCTTCGCAATGCAAGGCTTTGGAATTTTAGGTGGAGGAATCGTCGCTTTAATCGTGTCTGCCGCTTTCAACAACCGCTTCCCAGCACCACCATACATGAACGATCCCATTCGCCCCACCATACCGGAGGCTGATTATGTATGGCGAATCGTTCTAATGTTCGGCGCAATTCCGGCCGCATTAACATATTACTGGCGGATGAAAATGCCGGAGACGGCGAGATACACTGCCTTAGTTGCTCAAAACGCCAAACAAGCTGCGGCGGATATGTCGAAAGTGCTGCAAGTTAATCTGGAATTAAACGAACAGGAAAAAAATTTCACGACCGAATCACATGCAAATCAAAACCGTTTCGGTTTATTCTCACGTGAATTCGCCAAACGGCACGGGCTCCATTTATTAGGAACCACCACCACATGGTTTCTTTTAGACATAGCTTTTTACAGCCAAAACCTCTTCCAAAAAGACATTTTCACAGCCATTGAATGGCTTCCACCGGCGAAGACGATGAGCGAATTAGAAGAATGTTTCAAAATCGCAAAAGCTCAGACATTAATCGCACTCTGTGGGACCGTTCCCGGTTACTGGTTCACAGTGGCTCTAATTGATTACTTGGGTAGATTTTTCATTCAATTGATGGGATTTATAATGATGACGATCTTCATGTTTGCTCTGGCGTTTCCTTACAATCATTGGAAGGAGAAACCTCACAGAATTGGGTTTGTTGTAATGTATTCGTTGACATTTTTCTTTGCCAATTTTGGGCCGAATTCGACGACGTTCATAGTGCCAGCGGAGATATTTCCGGCTAGGTTGAGGTCGACGTGCCATGGGATATCGGCGGCGGCGGGGAAAGCAGGGGCGATAGTGGGGGCGTTTGGGTTTTTGTATGCGGCACAGAGTAAGGATCCGACATTGACGGATCCGGGTTACCCAACGGGGATCGGAATAAAGAATGCTTTGATTCTGTTGGGATGTGTGAATCTTTGTGGAGCATTGTTTACTCTATTGGTGCCAGAATCCAAAGGAAAGTCATTGGAGGAGCTGACCGGGGAGAATGAAGAGGAGAACAGGAATGGAAATACAAATATGGTTAGGGATGTAAATGTTTAG 1722 47.21 AHHQGFLLHHSLSFSTNFSTKRRNKEIKASIAKNLKMSQQQVGVLNALDLAKTQWYHFTAIIIAGMGFFTDAYDLFCISIVTKLLGRIYYHIPNGSKPGSLPPNIAAAVNGVAFCGTLSGQLFFGWLGDKLGRKKVYGITLILMVVCSIASGLSFSHSPKSVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILGGGIVALIVSAAFNNRFPAPPYMNDPIRPTIPEADYVWRIVLMFGAIPAALTYYWRMKMPETARYTALVAQNAKQAAADMSKVLQVNLELNEQEKNFTTESHANQNRFGLFSREFAKRHGLHLLGTTTTWFLLDIAFYSQNLFQKDIFTAIEWLPPAKTMSELEECFKIAKAQTLIALCGTVPGYWFTVALIDYLGRFFIQLMGFIMMTIFMFALAFPYNHWKEKPHRIGFVVMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPTLTDPGYPTGIGIKNALILLGCVNLCGALFTLLVPESKGKSLEELTGENEEENRNGNTNMVRDVNV* 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10325177 10328938 - CsaV3_2G012790.1 Csa02g01063 519120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01063 573 MobiDBLite consensus disorder prediction 550 573 - -
Csa02g01063 573 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-4-LIKE 42 565 - -
Csa02g01063 573 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 42 565 - -
Csa02g01063 573 Pfam Sugar (and other) transporter 62 552 IPR005828 GO:0016021|GO:0022857|GO:0055085
Csa02g01063 573 ProSiteProfiles Major facilitator superfamily (MFS) profile. 60 546 IPR020846 GO:0022857
Csa02g01063 573 MobiDBLite consensus disorder prediction 550 564 - -
Csa02g01063 573 CDD MFS_PhT 61 545 - -
Csa02g01063 573 Gene3D MFS general substrate transporter like domains 309 570 IPR036259 -
Csa02g01063 573 Gene3D MFS general substrate transporter like domains 56 303 IPR036259 -
Csa02g01063 573 SUPERFAMILY MFS general substrate transporter 46 553 IPR036259 -
Csa02g01063 573 TIGRFAM 2A0109: phosphate:H+ symporter 47 555 IPR004738 GO:0005315|GO:0006817|GO:0016021
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01063 Csa03g01213 CCT
Csa02g01063 Csa03g01213 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01063 Csa-Chr2:10325177 Csa03g01215 Csa-Chr3:9373442 0 dispersed
Csa03g02187 Csa-Chr3:19010288 Csa02g01063 Csa-Chr2:10325177 2.10E-91 transposed
Csa06g00361 Csa-Chr6:2938148 Csa02g01063 Csa-Chr2:10325177 0 transposed
Csa02g01063 Csa-Chr2:10325177 Csa03g01213 Csa-Chr3:9360966 0 wgd
Csa02g01063 Csa-Chr2:10325177 Csa03g02235 Csa-Chr3:19645056 7.37E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01063 K08176 - csv:101212412 1040.02