Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01071 ATGAATTCTTCATTCTTTCACTCCCAAAACTCCGATCTCTCACCCGAGTCTTCCTTTAGCTCCTTTGAATCCCTCCGATGGGAAGGTTTTCAAATCAACGATCACTCTCTCCCCTTCAACCAGAATGACTCCGACGAAATGCTTCTTCACAGCTTAATCTCCGAGGCTTATGTGGACCCACAGGAGAATTCCCCTCGGCAGGATCCCATCAAAGACGAGGAGGTCGATTCCCTCGGAGAAGAAGACCCCCACAAGAGAAAGTCCTACAGAGGGGTCCGCCGGCGACCGTGGGGAAAATACGCGGCGGAGATACGAGACTCAACCAGAAATGGGGTCAGGGTTTGGCTCGGGACATTCGACAGTGCCGAGGCGGCCGCTTTGGCCTACGATCAAGCAGCTTTTTCGATGAGAGGTTCCGCCGCCGTTCTTAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTGAAGGAGATGGAGATGATCAACTCCGCGGGTGAGGGCGGCGACGGTGGATCTCCGGTGGTGGCTTTGAAGAGAAAACATTCGATGAGGAAGAAATTCACGAGAAGAAAGAGCAAAGAGATAGATAGGATTGGGAAGACTGAGAATAATGTGGTTGTTTTGGAAGATCTTGGCTCTGATTATTTGGAAGAACTTTTAGAGTCATCCGAGAATCTCCGACCGTGGTAG 687 50.66 MNSSFFHSQNSDLSPESSFSSFESLRWEGFQINDHSLPFNQNDSDEMLLHSLISEAYVDPQENSPRQDPIKDEEVDSLGEEDPHKRKSYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSAAVLNFPVERVQESLKEMEMINSAGEGGDGGSPVVALKRKHSMRKKFTRRKSKEIDRIGKTENNVVVLEDLGSDYLEELLESSENLRPW* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10411032 10412184 - CsaV3_2G012870.1 Csa02g01071 519128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01071 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 31 221 - -
Csa02g01071 228 CDD AP2 87 147 IPR001471 GO:0003700|GO:0006355
Csa02g01071 228 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Csa02g01071 228 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Csa02g01071 228 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
Csa02g01071 228 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677
Csa02g01071 228 MobiDBLite consensus disorder prediction 58 92 - -
Csa02g01071 228 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700|GO:0006355
Csa02g01071 228 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Csa02g01071 228 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Csa02g01071 228 PANTHER DNA-BINDING DOMAIN 31 221 IPR044808 GO:0003700|GO:0009873
Csa02g01071 228 MobiDBLite consensus disorder prediction 65 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01071 Csa-Chr2:10411032 Csa07g01649 Csa-Chr7:16919258 6.71E-40 dispersed
Csa02g01071 Csa-Chr2:10411032 Csa03g01217 Csa-Chr3:9386136 3.56E-79 wgd
Csa02g01071 Csa-Chr2:10411032 Csa03g02237 Csa-Chr3:19674392 1.61E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30907 PF00847 AP2 9.50E-15 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01071 K14516 - csv:101206564 415.616