Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g01071 | ATGAATTCTTCATTCTTTCACTCCCAAAACTCCGATCTCTCACCCGAGTCTTCCTTTAGCTCCTTTGAATCCCTCCGATGGGAAGGTTTTCAAATCAACGATCACTCTCTCCCCTTCAACCAGAATGACTCCGACGAAATGCTTCTTCACAGCTTAATCTCCGAGGCTTATGTGGACCCACAGGAGAATTCCCCTCGGCAGGATCCCATCAAAGACGAGGAGGTCGATTCCCTCGGAGAAGAAGACCCCCACAAGAGAAAGTCCTACAGAGGGGTCCGCCGGCGACCGTGGGGAAAATACGCGGCGGAGATACGAGACTCAACCAGAAATGGGGTCAGGGTTTGGCTCGGGACATTCGACAGTGCCGAGGCGGCCGCTTTGGCCTACGATCAAGCAGCTTTTTCGATGAGAGGTTCCGCCGCCGTTCTTAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTGAAGGAGATGGAGATGATCAACTCCGCGGGTGAGGGCGGCGACGGTGGATCTCCGGTGGTGGCTTTGAAGAGAAAACATTCGATGAGGAAGAAATTCACGAGAAGAAAGAGCAAAGAGATAGATAGGATTGGGAAGACTGAGAATAATGTGGTTGTTTTGGAAGATCTTGGCTCTGATTATTTGGAAGAACTTTTAGAGTCATCCGAGAATCTCCGACCGTGGTAG | 687 | 50.66 | MNSSFFHSQNSDLSPESSFSSFESLRWEGFQINDHSLPFNQNDSDEMLLHSLISEAYVDPQENSPRQDPIKDEEVDSLGEEDPHKRKSYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSAAVLNFPVERVQESLKEMEMINSAGEGGDGGSPVVALKRKHSMRKKFTRRKSKEIDRIGKTENNVVVLEDLGSDYLEELLESSENLRPW* | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 10411032 | 10412184 | - | CsaV3_2G012870.1 | Csa02g01071 | 519128 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g01071 | 228 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B | 31 | 221 | - | - | |
Csa02g01071 | 228 | CDD | AP2 | 87 | 147 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g01071 | 228 | SMART | rav1_2 | 88 | 152 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g01071 | 228 | ProSiteProfiles | AP2/ERF domain profile. | 88 | 146 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g01071 | 228 | Pfam | AP2 domain | 88 | 138 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g01071 | 228 | SUPERFAMILY | DNA-binding domain | 88 | 148 | IPR016177 | GO:0003677 | |
Csa02g01071 | 228 | MobiDBLite | consensus disorder prediction | 58 | 92 | - | - | |
Csa02g01071 | 228 | Gene3D | AP2/ERF domain | 87 | 148 | IPR036955 | GO:0003700|GO:0006355 | |
Csa02g01071 | 228 | PRINTS | Ethylene responsive element binding protein signature | 89 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g01071 | 228 | PRINTS | Ethylene responsive element binding protein signature | 112 | 128 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g01071 | 228 | PANTHER | DNA-BINDING DOMAIN | 31 | 221 | IPR044808 | GO:0003700|GO:0009873 | |
Csa02g01071 | 228 | MobiDBLite | consensus disorder prediction | 65 | 87 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01071 | Csa-Chr2:10411032 | Csa07g01649 | Csa-Chr7:16919258 | 6.71E-40 | dispersed | |
Csa02g01071 | Csa-Chr2:10411032 | Csa03g01217 | Csa-Chr3:9386136 | 3.56E-79 | wgd | |
Csa02g01071 | Csa-Chr2:10411032 | Csa03g02237 | Csa-Chr3:19674392 | 1.61E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30907 | PF00847 | AP2 | 9.50E-15 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g01071 | K14516 | - | csv:101206564 | 415.616 |