Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01076 ATGAACACCCCTATACAAGTTTTCAATTCTTACGACCGTCAGGCCGATCTCGAAGCTTTCCACAATACCAAATTGGGAGTGAAAGGTTTGGCGGATGCCGGCGTTTCCCAACTCCCAAGAATCTTCTGCCACGACAATCAATCGGCGGCGTCCCTTATCTCTTCCCCTGCAGCTGCGGCGGAGGAGAAATTAGCAGGTAAAACAGACGCCAAGAATTTAACAATCCCCGTTATCGATCTACAAGATTCTCACAAAAACAGAGTAAAAATAATAAACGAAATCAAAGACGCTTGTAAGAATTGGGGATTCTTTCAAATCCTCAACCATGGGGTTCCATTAAGCGTAATGAAGGAGATGATGGCCGGAATCCGGCGGTTTCACGAGCAAGAAGAGGAAATGAAGAAGGATCTGTACTCGAGAGATTTCCAGAGGAAGATACTTTTCAATACGAATTTTGATTTGTTCAAAGGGGTGTCGACGAATTGGAGGGACACGTTGACGGTGGTGGTGGCACCGCGTGGGGTGGAGGAGGAGGAGATACCGGAAGTATCGAGGGAGGCGATAGTGGAATATTCGAGAATGGTGAAGGAATTGGGGGATATTTTACTTGAATATTTAGGGGAGGGATTAGGAGTGGGGAGTAATCGGTTGAAGGAATTGGGTTGTGGAGATGGAATGGTAATGTTCTGTCATTACTATCCGCCGTGCCCACAGCCGGAAATGACATGGGGAACCACAGATCATACGGATAGTAGTTTTTTGACGGTGCTTTTGCAGGATGAGTTGGGTGGACTTCAAGTCCGCCATGAGGATCGCTGGGTTGATGTTCATCCCATCGAAGGAGCTTTTGTTGTTAACATGGGCGATTTCATGCAGCTGATGTCAAATGATACGTTCCTAAGTGTGAATCATAGGGTTTTAGCAAATAAGAGAGGGCCAAGAATCTCAGTGGCAAGTTTCTTTAGGTGCAATCTTGCACCAGAAAATGGTTTAGTTTTTGGACCTCTTAAGGAGTTAAGATCAGAGGAAAATCCAGACATTTATAGAGAAACTTCCATCAAAGACTATGTGGCTCATTACTATCACAAAGGCCTCAATGGCATCTCTGCTCTTGAACACTTCAAACTTTGA 1131 45.09 MNTPIQVFNSYDRQADLEAFHNTKLGVKGLADAGVSQLPRIFCHDNQSAASLISSPAAAAEEKLAGKTDAKNLTIPVIDLQDSHKNRVKIINEIKDACKNWGFFQILNHGVPLSVMKEMMAGIRRFHEQEEEMKKDLYSRDFQRKILFNTNFDLFKGVSTNWRDTLTVVVAPRGVEEEEIPEVSREAIVEYSRMVKELGDILLEYLGEGLGVGSNRLKELGCGDGMVMFCHYYPPCPQPEMTWGTTDHTDSSFLTVLLQDELGGLQVRHEDRWVDVHPIEGAFVVNMGDFMQLMSNDTFLSVNHRVLANKRGPRISVASFFRCNLAPENGLVFGPLKELRSEENPDIYRETSIKDYVAHYYHKGLNGISALEHFKL* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10486203 10488514 - CsaV3_2G012920.1 Csa02g01076 519133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01076 376 Pfam non-haem dioxygenase in morphine synthesis N-terminal 75 145 IPR026992 -
Csa02g01076 376 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 7 375 - -
Csa02g01076 376 Pfam 2OG-Fe(II) oxygenase superfamily 227 321 IPR044861 -
Csa02g01076 376 SUPERFAMILY Clavaminate synthase-like 24 366 - -
Csa02g01076 376 Gene3D - 17 359 IPR027443 -
Csa02g01076 376 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 224 325 IPR005123 -
Csa02g01076 376 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE HOMOLOG 1-LIKE 7 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01076 - - - csv:101220285 744.191
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01076 Csa03g01223 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01076 Csa-Chr2:10486203 Csa03g01227 Csa-Chr3:9441109 1.97E-131 dispersed
Csa03g03716 Csa-Chr3:32988982 Csa02g01076 Csa-Chr2:10486203 4.33E-51 transposed
Csa05g02883 Csa-Chr5:29208475 Csa02g01076 Csa-Chr2:10486203 8.65E-108 transposed
Csa07g01100 Csa-Chr7:10615051 Csa02g01076 Csa-Chr2:10486203 2.54E-06 transposed
Csa02g01076 Csa-Chr2:10486203 Csa03g01223 Csa-Chr3:9428438 4.52E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g668 . . . . . . . Bma05g01073 Cmo08g01066 . . . Car06g01145 . . . . . . . . . . . . . . . . . . . . . . . Csa02g01076 Chy05g00336 Cme06g00508 . . . . Bpe05g00863 Bpe13g00564 . . . Cmo06g01338 . Cma08g01091 . Car08g00966 . . . . . . . . . . . . . . . . . Lsi09g01246 Csa03g01223 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000120 1 1 3 2 2 1 5 9 8 1 3 7 6 4 12 8 7 4 4 8 9 14 11 13 12 12 11 13 13 18 222
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01076 Csa_Chr02 FPKM 52.100056 61.243481 42.119732 44.140503 20.969748 19.205692 19.973936 31.646566 33.218437 31.970873