Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01081 ATGAAGATGGAAAAAGGGAATTTGGTGCTCAAAACTCCTGATCCCCAACTCCAGCATCTTGCTTATACATCATACAAAAGCAGTCAATCTTGGTCCATCATGAGAGATCAAAACAAAAAAAACAAGGATAAAAAGGAAAAGGAGAAGGAAGAAGAGAATAGAAAAAGAAGAGAAAAGAAGAAGGAGAAGCAAGAAGAGAAGAAAAGAAGAGAAGAAGAAGGGAGAGAGACGTTTGAGGAAAACATAGAAGAAAAGAAAGAAGAAAAGAAAGAAGAGAAAATATTGGATGGAATTAGAATTTTAAAGGATAATTTCCCACGGCTCCCTTTCTCAATTTTCGCTAATCTGGCTAATTCTAATCCGTGGTGGGTCAGTCCGGTGGGGTTTCCGACCACCGCCCCGATATCAACCACCGTCGACGGCAGTGGAAGAGATAAAGATGAGGAAGAAGATGAGGCAAAGGGTGGGGGTGTGGAGGTCGGAAACCGCAGATCGAGAGGGCGGCCACCGGGATCAAAAAACAAACGAAAATCTCCAATCATCGTCACCCGCGACAGCCCTCACACGCTTAGCACCCACGTGATAGAGATCGTGGGAGGAGCCGACGTCGCGGACAGCATAAACCAATTCTGCTGCCGACGGCAACGTGGAGTTTGTGTTCTCAGTGGCAGCGGTACGGTTGTGGACGTAACAGTCAGGCAATCGGCGGGTTCCGGCGCAGTGATCCAACTTCGTGGCCGGTTCGAGATTTTGTCTGTGAGTGGGTCTTTTCTTCCCGGTCGAGACCCTCCCTGTTCAACCGGGCTGACCGTATACTTGGCTGGCGGCCAGGGGCAGGTGATTGGAGGGACGGTAGTGGGTCCACTATTGGCCGGTGGGCCTGTAATATTGATTGCTGCTACCTTTGCTAATGCAACTTATGAGAGACTTCCCTTACAACACCATCATAATTATGAAGAAAGAGAGGTTTCTCCCGCCACCACGAGTGCCGGAGAACTGGAGGAGCCCCTGCCTTATCCTCGGATCGAAACTTCAATTTACGACTTGATTCCACCGAATAATAATAATAATCATGCACTCGATGGCTATGCTTGGACTCATGACAGACCATCTCTTGTTTAA 1122 47.95 MKMEKGNLVLKTPDPQLQHLAYTSYKSSQSWSIMRDQNKKNKDKKEKEKEEENRKRREKKKEKQEEKKRREEEGRETFEENIEEKKEEKKEEKILDGIRILKDNFPRLPFSIFANLANSNPWWVSPVGFPTTAPISTTVDGSGRDKDEEEDEAKGGGVEVGNRRSRGRPPGSKNKRKSPIIVTRDSPHTLSTHVIEIVGGADVADSINQFCCRRQRGVCVLSGSGTVVDVTVRQSAGSGAVIQLRGRFEILSVSGSFLPGRDPPCSTGLTVYLAGGQGQVIGGTVVGPLLAGGPVILIAATFANATYERLPLQHHHNYEEREVSPATTSAGELEEPLPYPRIETSIYDLIPPNNNNNHALDGYAWTHDRPSLV* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10540538 10545421 + CsaV3_2G012970.1 Csa02g01081 519138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01081 373 Coils Coil 33 95 - -
Csa02g01081 373 MobiDBLite consensus disorder prediction 141 161 - -
Csa02g01081 373 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 144 370 - -
Csa02g01081 373 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 144 370 IPR014476 GO:0003680
Csa02g01081 373 MobiDBLite consensus disorder prediction 36 90 - -
Csa02g01081 373 MobiDBLite consensus disorder prediction 134 181 - -
Csa02g01081 373 SUPERFAMILY AF0104/ALDC/Ptd012-like 189 315 - -
Csa02g01081 373 CDD DUF296 192 302 IPR005175 -
Csa02g01081 373 MobiDBLite consensus disorder prediction 24 90 - -
Csa02g01081 373 Gene3D - 191 324 - -
Csa02g01081 373 Pfam Plants and Prokaryotes Conserved (PCC) domain 192 303 IPR005175 -
Csa02g01081 373 ProSiteProfiles PPC domain profile profile. 187 324 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01081 Csa-Chr2:10540538 Csa03g01238 Csa-Chr3:9482124 2.81E-64 dispersed
Csa03g04489 Csa-Chr3:39112677 Csa02g01081 Csa-Chr2:10540538 1.37E-32 dispersed
Csa02g01081 Csa-Chr2:10540538 Csa03g01009 Csa-Chr3:8151266 2.71E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01081 - - csv:101221494 525.398