Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01087 ATGAAGCTCCCCGATCTCGGCGGAAATGGTGGAGGAATCGTGAACCAGGCACGGATGATCGCCGTGTCGTTGGCCGGTGTTGTGGCCGCTGCTGGAACACATTATCACTGGGGCTGGAAGTCAAGGTCTTCTTCGCCTAGCTTCATTGAGGATCAAAAAATCGTACCGGTCATGGGACGGACAGAATCCGGCCGTGCCGCCACCTTTGAGGCGTTCCCCGACTATGTTGCAAGGCAATTGGGATTTAAGGATGCGGGAGAGTGTCCAAAGTTGGGGAAGCTGATAAATGATTATTTGAAGAAGAAGAAAGGCTGTGAAGAATGGATATATGACTATTTGGTTGATCGTGAAAAGGATAATGCAGATTCATTATATGTGAAGCTCATTCAAGAGTTGGAGACTTGTATTTTGACCTATTTTGCTTTTCATTGGGATAAAGCTCCTCAAATGGTTTCTCAGGCGTTGACGGATGAATCGGAGCACAAAACTAAGCTCAAAAGCTTTATTATGGCCGCCACAAGGAAACGGAGGTTCGAAAGGGTAACGAAGGACTTGAAAGTGACGAGGGTTATATCGACTCTAGTGGAAGAAATAAAAGCAATCGGCGGCAGCAGCAACGGAGTGGAAGCTGACTCTAAATGCACCGACGTTATGGCGCCGGTGGCCCTCAACAAGAGGAGCCCCGTTCTCCTTCTCATGGGCGGCGGAATGGGAGCCGGCAAAAGCACCGTCACCAAAGACATCCTCAAAGAACCATTCTGGTTGGACGCGGAACCAAATGCCGTGGTGGTAGAGGCAGACGCTTTCAAAGAAAGCGACGTTGTTTATAAAGCAATTAACTCCATGGGCTGCCCTGATGACATGCTTCAGACATCGGAACTCGTACACCAATCATCGACGGACGCAGCATCGTCATTGTTGGTGACTGCACTAAATGAAGGTAGAGACGTGATCATGGACGGTACTCTTGCATGGGAGCCATATGTGAACCAAACGATTGAGATGGCTAGAAATGTTCATAAACACCGGTATCGTATGGGGGTTGGCTACAAAGTCAACGAAGACGGGACCGTCATTGAAAATTACTGGGAACAAGTAAGTCCAGAAGAAGAAGAACAATATGATTTCGACGGGATTGTCGAGAAAGATCGAAAGCCTTATAGAATCGAATTGGTTGGTGTTGTTTGTGACGCACATTTGGCTGTTATTAGAGGCATAAGGAGGGCAGTTATGGTTGGGAGGGCTGTGAGGGTGAACTCACAATTGAAGTCCCACAAAAGATTTTCAGAGGCTTTTCCCAGATATTGTGACCTTGTTGATAATGCCAGGCTCTATTCCACCAATGTATTGGGGATATCACCGAAGTTGATTGGGTGGAAAGATGGAGATAACAAGTTATTGGTAGATCCAGAAGAAATCAAATGTGTTTCAGTGACAAGTAAGTTGAATGAGAACGCAAATTCAGTATATGAGCTTTACCAAGATGCAACCAATGTTTTAAATGAAAAGAGTTCTATATGGAAAGAAACTGTTTTGTCATCTTCAAGGCCCTCTGTTCAGATGGAGTTGAAGGCTTCTATACAAAGCATTGAATCAAAATAG 1602 45.69 MKLPDLGGNGGGIVNQARMIAVSLAGVVAAAGTHYHWGWKSRSSSPSFIEDQKIVPVMGRTESGRAATFEAFPDYVARQLGFKDAGECPKLGKLINDYLKKKKGCEEWIYDYLVDREKDNADSLYVKLIQELETCILTYFAFHWDKAPQMVSQALTDESEHKTKLKSFIMAATRKRRFERVTKDLKVTRVISTLVEEIKAIGGSSNGVEADSKCTDVMAPVALNKRSPVLLLMGGGMGAGKSTVTKDILKEPFWLDAEPNAVVVEADAFKESDVVYKAINSMGCPDDMLQTSELVHQSSTDAASSLLVTALNEGRDVIMDGTLAWEPYVNQTIEMARNVHKHRYRMGVGYKVNEDGTVIENYWEQVSPEEEEQYDFDGIVEKDRKPYRIELVGVVCDAHLAVIRGIRRAVMVGRAVRVNSQLKSHKRFSEAFPRYCDLVDNARLYSTNVLGISPKLIGWKDGDNKLLVDPEEIKCVSVTSKLNENANSVYELYQDATNVLNEKSSIWKETVLSSSRPSVQMELKASIQSIESK* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10600921 10610422 + CsaV3_2G013030.1 Csa02g01087 519144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01087 533 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 17 532 - -
Csa02g01087 533 Gene3D - 210 455 IPR027417 -
Csa02g01087 533 PANTHER UNCHARACTERIZED 17 532 IPR044802 -
Csa02g01087 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 384 IPR027417 -
Csa02g01087 533 Pfam Zeta toxin 224 334 IPR010488 GO:0005524|GO:0016301
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01087 - - - csv:101217539 1039.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01087 Csa03g01259 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01346 Csa-Chr2:12964101 Csa02g01087 Csa-Chr2:10600921 0 transposed
Csa02g01087 Csa-Chr2:10600921 Csa03g01259 Csa-Chr3:9638128 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g616 . . . . . . . . . . . Cma14g01779 Car06g01161 Car14g01601 . . Cpe03g01489 . . . . . . . . . . . . . . . . . Cone4ag0298 . Csa02g01087 Chy05g00349 Cme06g00541 . Blo07g00245 . . . Bpe13g00575 . . . . . . Cma17g00177 . Car17g00159 Cpe12g00153 . . . . . . . . Cla05g00484 Cam05g0527 Cec05g0540 Cco05g0540 Clacu05g0526 Cmu05g0498 Cre05g0565 . Csa03g01259 Chy06g00514 Cme05g00535
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000661 0 3 3 1 2 3 6 3 3 3 3 3 5 3 3 5 3 4 5 3 3 3 3 3 3 3 3 7 5 3 100
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01087 Csa_Chr02 FPKM 1.550924 1.663812 0.221866 0.29884 1.27923 1.37454 1.334565 1.131197 0.804219 0.913245