Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01090 ATGGATGATACTTTTCCTGTTGAATTCTGGCATAACGATCACTTTTGGCTCGACGCTCCCATTTCCGTTCCCGTCTCTGCCCCTACTTCTCCTCCTCCTGCGAAACAGATAAGTGCTTTCCTACCATATGATCTCTCTCCACCACCTACCGGATTATTGGGACAAGACAATAATATTGCCACAACTACTGCTGCCACCGTCATCGCCTCCGCCTCCGCCTCCGCCTCCACAAGCTATGATTCTAGAAATGTGAACAAGAGGATGATTGAGTACTGGAGGAAGCATTGGCATGAGAAGAAAGAATTACCTGTTTCCGCAGGGGATTTAGAGAGAGAGAAATGTCATCGACACATGTTGAATGAGAGAATGAGGAGGGAGAAACAGAAACAATGTTATTTGGCACTCCACTCTATGCTCCCCAGAAATACTAAGAACGATAAGAATTCGATCGTTCAAAGCGCGGCGAGAACAATACAAGAGATGAAAGGCTTAGAGAAGACATTGAAGAGGAGAAACTCAGAGTTGGAAATGGAAATAGCAATAGCAATGAAGAAAAAAGAAAAGAAAGAAGGAATAATAAATGTAGCATTGGCCAATACTTCTTGTGGGATAAACTCAATGTTAACTGTTCTCAATGTGCTGAAAACTGTTGGAGTAAATTCCAATGCCATTCATGCCACTTTCTTCAACTCTCAATTCTCAGCGCAATTAGCCATTGATACCCATATGAGAGTTGCCGAAGTAGAAAGAGCATTACAGCTGACGCTAAACGAAGCAGAGAGGAAATTTCAAAGGCAACACAGCGAAGGATCCAAAGAAATTAAAGAAAGTTATTTTTAA 840 42.14 MDDTFPVEFWHNDHFWLDAPISVPVSAPTSPPPAKQISAFLPYDLSPPPTGLLGQDNNIATTTAATVIASASASASTSYDSRNVNKRMIEYWRKHWHEKKELPVSAGDLEREKCHRHMLNERMRREKQKQCYLALHSMLPRNTKNDKNSIVQSAARTIQEMKGLEKTLKRRNSELEMEIAIAMKKKEKKEGIINVALANTSCGINSMLTVLNVLKTVGVNSNAIHATFFNSQFSAQLAIDTHMRVAEVERALQLTLNEAERKFQRQHSEGSKEIKESYF* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10626443 10627763 - CsaV3_2G013060.1 Csa02g01090 519147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01090 279 Gene3D - 107 178 IPR036638 GO:0046983
Csa02g01090 279 Coils Coil 158 185 - -
Csa02g01090 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 161 IPR011598 GO:0046983
Csa02g01090 279 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 268 IPR044658 -
Csa02g01090 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 109 178 IPR036638 GO:0046983
Csa02g01090 279 CDD bHLH_AtbHLH_like 117 169 IPR045239 -
Csa02g01090 279 PANTHER TRANSCRIPTION FACTOR BHLH92 1 268 - -
Csa02g01090 279 Pfam Helix-loop-helix DNA-binding domain 113 161 IPR011598 GO:0046983
Csa02g01090 279 SMART finulus 118 167 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01090 - - - csv:105434595 506.908
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01090 Csa-Chr2:10626443 Csa02g00045 Csa-Chr2:370393 1.03E-06 dispersed
Csa02g01090 Csa-Chr2:10626443 Csa01g02942 Csa-Chr1:25826012 8.13E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g612 . . . . . . . . Cmo08g01078 Cmo17g00176 . . . . . . . . . . . . . . Cla06g00637 Cam06g0681 Cec06g0684 Cco06g0690 Clacu06g0667 Cmu06g0659 Cre06g1427 . . . Cone4ag0295 . Csa02g01090 Chy05g00351 . . . . . . . . Bma06g01583 . . . Cma08g01106 Cma17g00179 Car08g00979 Car17g00161 Cpe12g00155 . . . . . . . . . . . . . . . Lsi09g01263 . . Cme05g00532
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008643 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30910 PF00010 HLH 4.30E-07 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01090 Csa_Chr02 FPKM 3.70297 0.0 1.666471 1.647179 0.934972 0.0 2.074457 0.0 0.0 0.0