Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01109 ATGGAGTCCGGTGGTCCGCCCACCCCTCCGCCGCTCCCTCCGCCGCCTACTGGCGCCACTCTCCTTGGAAAGTACCAATTAGGCCGTTTCCTCGGCCGTGGAAGCTTCGCCAAGGTCTATCAAGCTCGTTCTCTCGCCGATAACTCCATTGTCGCCGTCAAAATCATCGACAAGAACAAAACCATCGACGCCGCCATGGAACCCTGCATTGTACGTGAGATCTCCGTGATGCGACGCCTTCAGCACCATCCCAGCATCCTCAAAATCCATGAAGTTATGGCGACGAAAACGAAGATCTACCTCGTTGTCGATTACGCATCCGGTGGTGAACTATTCGCGAAACTCCTCCGCCGTGGTCGCTTAACGGAGTCCACCGCTCGCCGTTACTTTCAACAATTAATTTCTGCTCTCCATTTTTGTCATCAAAACGGCGTTGCTCATCGCGACATCAAACCCCAAAATCTCCTCCTCGATGAAGACGGTAACCTAAAGGTCTCCGACTTCGGTCTCTCCGCTTTGCCGGAACAGATCAAAGACGGAATGCTTCACACCGCCTGTGGAACTCCGGCATACACCGCGCCAGAGGTTGTTTCCCGGCGAGGCTACGATGGGGCAAAAGCCGATGCGTGGTCCTGTGGTGTTATCCTCTTCGTTTTACTCTCCGGTCATCTTCCATTCAGCGATAACAACCTCGTCGCTATGTACAAGAAGGTTTATCGCCGGGAATATCAATTTCCCGATTCAATTTCAAAGCCAGCAAGACATTTGATCTTCCAATTACTGGATCCAAATCCACATACAAGGATGAGCATTGAGGCATTGATGCAACATTCATGGTACAAGAAATCATTGCGCTCAAAGCCCCAAATTAGCAACAGGAGCTTATTTGATTCATTGGGTAATTACAAATCTGAATTGGGTGTTTCTGGATTGAATGCATTTGATATAATTTCAATGTCTTCTGGTTTAGATCTGTCTGGGTTGTTTGAAACAACAGATTGTAATAAAAAGAGATTCACAACAGGGGTTGGTATGGAGAAAGTGGAAGAAAGGGTAAGAGAGATTGGTGGAGAATTGGGTTATAGAGTTGAGAAAGGGAAAAGCGGGGCAATTGGGTTAGGGAAAGGGAGAATGATATTGGTGGTTGAAGCTTTGGAAATAACTTCAAATCTGTTAATGGTGGAAGTGAAGGTAGCTGAATCCAAGATGGAGTTTGAGAGGATGCATTGGGGAGATTTGAAAGCTAAGTTACAAGACATTGTTGATTCTTGGCATACAAATGAGGGAATGTAA 1293 47.1 MESGGPPTPPPLPPPPTGATLLGKYQLGRFLGRGSFAKVYQARSLADNSIVAVKIIDKNKTIDAAMEPCIVREISVMRRLQHHPSILKIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESTARRYFQQLISALHFCHQNGVAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYTAPEVVSRRGYDGAKADAWSCGVILFVLLSGHLPFSDNNLVAMYKKVYRREYQFPDSISKPARHLIFQLLDPNPHTRMSIEALMQHSWYKKSLRSKPQISNRSLFDSLGNYKSELGVSGLNAFDIISMSSGLDLSGLFETTDCNKKRFTTGVGMEKVEERVREIGGELGYRVEKGKSGAIGLGKGRMILVVEALEITSNLLMVEVKVAESKMEFERMHWGDLKAKLQDIVDSWHTNEGM* 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10872284 10874288 - CsaV3_2G013250.1 Csa02g01109 519166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01109 430 CDD CIPK_C 312 414 - -
Csa02g01109 430 Gene3D Kinase associated domain 1, KA1 308 422 - -
Csa02g01109 430 SMART serkin_6 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01109 430 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Csa02g01109 430 Pfam NAF domain 311 365 IPR004041 GO:0007165
Csa02g01109 430 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Csa02g01109 430 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01109 430 SUPERFAMILY Protein kinase-like (PK-like) 22 288 IPR011009 -
Csa02g01109 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 427 - -
Csa02g01109 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Csa02g01109 430 Pfam Protein kinase domain 25 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01109 430 Gene3D Transferase(Phosphotransferase) domain 1 17 307 - -
Csa02g01109 430 PANTHER SERINE/THREONINE KINASE 16 427 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01109 Csa03g01272 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01109 Csa-Chr2:10872284 Csa06g01610 Csa-Chr6:13852353 8.71E-130 dispersed
Csa02g01109 Csa-Chr2:10872284 Csa03g01272 Csa-Chr3:9724996 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77890 PF00069 Pkinase 2.50E-72 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01109 K12761 - csv:101215156 837.795