Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01116 ATGACACAATCTCTCCAACTTTTCACTTCCTCCGCCATCTCTCTCCCCAAACACTCCATCTCTAAACCCTCCTCTTCCTCCGCCGCTTTCCGCTTTCCTTTCTCCTTCTCCAAATCCTCAATTAGAGCTTCTTCTTCTTCGGATCTCAATCCTCTCTCATCTTCTTCCACTTCCCAAGTCTTGGTTTCTGAAAATGGCTCCAGTTCCGGTGGTGGGGTTGTGTTCTCTTCTGCTGCTACTAGGGAGTTTGTGTCTGTTGCCTCTGATTCCACCTCGATTGAGGTTGATGCTGTCACTGAGGCTGAGTTGAAGGAGAATGGGTTCAGGAGTACCAGGAGGACTAAGCTCGTGTGCACTATTGGCCCTGCTACTTGTGGATTCGAACAGCTCGAGGCGCTCGCTGTTGGTGGTATGAATGTCGCTAGGATCAATATGTGCCATGGGACTCGAGACTGGCATCGAACCGTTATTGAACGTGTGCGGAGGCTCAATGATGGGAAGGGATATGCTGTTGCTATTATGATGGACACCGAAGGGAGTGAAATTCACATGGGTGATCTTGGTGGCGCCTCCTCGGCTAAAGCGGAAGATGGTGAAATTTGGACATTCAGTGTCAGAGCTTTTGATTCAACCCTCCCAGAACGCACCATTAATGTGAACTATGAAGGGTTTGCAGAAGATGTGAGAGTGGGTGATGACCTTCTTGTTGATGGTGGAATGGTGAGGTTTGAGGTAATCGAAAAAATTGGTCCAGATGTTAAATGCCTGTGTACTGACCCGGGATTGTTGTTGCCACGGGCTAATTTGACTTTTTGGAGGGATGGACATCTAGTACGAGAACGTAATGCCATGCTCCCTACAATTTCTTCTAAGGATTGGTTGGATATTGATTTTGGGATTGCTGAAGGTGTTGATTTTCTGGCCATATCATTTGTCAAGTCTGCTGAAGTAATTAAACATCTCAAAAGCTATATCGCTGCACGTTCTCGTGGCAGTGACATTTCCATCATTGCAAAAATAGAGAGTCTGGACTCGTTGAAGAACTTGGAAGAAATTATTTTGGCATCAGATGGAGCTATGGTAGCTAGAGGAGATTTAGGAGCTCAAATACCATTGGAACAGGTGCCATCAGTCCAGCAAAAGGTCGTCCAACTGTGCAGACAATTAAATAAACCAGTTATTGTTGCTTCTCAGCTGCTTGAGTCAATGATCGAATATCCTACACCCACCAGAGCTGAAGTGGCTGATGTTTCCGAGGCGGTTAGGCAGCGATCAGATGCTCTAATGCTGTCTGGTGAGTCCGCCATGGGCCAGTACCCCGACAAGGCATTGGCTGTTTTGAGAAGTGTTAGTCTAAGAATTGAAAAGTGGTGGAGGGATGAAAAACGCCATGAACCTATGGAACTCCCAGAAGTTGGATCTTCATTCTCAGATAGTATCTTAGAAGAGATCTGCAATTCGGCTGCTAAAATGGCTAATAATTTGGAGGTAGATGCAATTTTTGTCTACACAACATCAGGCCACATGGCATCTCTGCTGTCCCGTTGCCGACCTGATTGCCCAATCTTTGCTTTTACTTCCACAACATCTGTTAGGAGACGTCTTAACTTGCAATGGGGATTGATACCCTTCCGACTGAGCTTCTCTGACGACATGGAAAACAACCTCAACAAAACATTTTTGCTGCTTAAAGCCAGAAACTTGATCAAATCAGGTGACCTTGTAATTGCTGTATCAGACATGTTGCAATCTATCCAAGTTATGAATGTTCCATAA 1776 45.55 MTQSLQLFTSSAISLPKHSISKPSSSSAAFRFPFSFSKSSIRASSSSDLNPLSSSSTSQVLVSENGSSSGGGVVFSSAATREFVSVASDSTSIEVDAVTEAELKENGFRSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTRDWHRTVIERVRRLNDGKGYAVAIMMDTEGSEIHMGDLGGASSAKAEDGEIWTFSVRAFDSTLPERTINVNYEGFAEDVRVGDDLLVDGGMVRFEVIEKIGPDVKCLCTDPGLLLPRANLTFWRDGHLVRERNAMLPTISSKDWLDIDFGIAEGVDFLAISFVKSAEVIKHLKSYIAARSRGSDISIIAKIESLDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSVQQKVVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRSDALMLSGESAMGQYPDKALAVLRSVSLRIEKWWRDEKRHEPMELPEVGSSFSDSILEEICNSAAKMANNLEVDAIFVYTTSGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLQWGLIPFRLSFSDDMENNLNKTFLLLKARNLIKSGDLVIAVSDMLQSIQVMNVP* 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10952022 10957028 - CsaV3_2G013320.1 Csa02g01116 519173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01116 591 SUPERFAMILY PK C-terminal domain-like 443 589 IPR036918 -
Csa02g01116 591 PRINTS Pyruvate kinase family signature 169 185 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa02g01116 591 PRINTS Pyruvate kinase family signature 304 318 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa02g01116 591 PRINTS Pyruvate kinase family signature 336 362 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa02g01116 591 PRINTS Pyruvate kinase family signature 363 387 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa02g01116 591 PRINTS Pyruvate kinase family signature 388 412 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa02g01116 591 PRINTS Pyruvate kinase family signature 413 431 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa02g01116 591 PRINTS Pyruvate kinase family signature 432 448 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa02g01116 591 TIGRFAM pyruv_kin: pyruvate kinase 112 580 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa02g01116 591 SUPERFAMILY PK beta-barrel domain-like 181 272 IPR011037 -
Csa02g01116 591 Gene3D - 180 286 IPR015806 GO:0004743|GO:0006096
Csa02g01116 591 Gene3D - 112 454 IPR040442 -
Csa02g01116 591 Pfam Pyruvate kinase, barrel domain 112 457 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa02g01116 591 PANTHER PLASTIDIAL PYRUVATE KINASE 1, CHLOROPLASTIC 74 591 - -
Csa02g01116 591 PANTHER PYRUVATE KINASE 74 591 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Csa02g01116 591 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 97 458 IPR015813 GO:0003824
Csa02g01116 591 ProSitePatterns Pyruvate kinase active site signature. 334 346 IPR018209 GO:0004743|GO:0006096
Csa02g01116 591 Pfam Pyruvate kinase, alpha/beta domain 482 581 IPR015795 -
Csa02g01116 591 Gene3D - 455 581 IPR036918 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01116 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101218017 1071.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01116 Csa-Chr2:10952022 Csa04g00004 Csa-Chr4:47760 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g584 Blo01g00106 . . Bda08g00261 . . . Bma05g01085 . . . . . . . . . . . . . . . . Cla06g00619 Cam06g0657 Cec06g0661 Cco06g0667 Clacu06g0644 Cmu06g0638 Cre06g1405 . . . . . Csa02g01116 Chy05g00372 . . . . . Bpe05g00875 . . . Sed09g0729 . . Cma08g01117 Cma17g00198 Car08g01000 Car17g00175 Cpe12g00169 Cpe17g00168 Bhi12g02248 Tan06g2474 Cmetu05g0533 . Hepe03g0236 . Lcy13g0319 . . . . . . . Lsi09g01285 . . Cme05g00500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01116 Csa_Chr02 FPKM 53.383732 57.42696 57.852306 57.409454 56.732468 55.030231 54.084888 113.145912 112.928169 108.726746