Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01117 ATGTCCCAATCGGCTAGTCCAATAACCCAACGGGTTCAGTCTTCTTCTTCTTCTTCTTCGATTGATACCAGAGGAAAGCATCGGATTCAAGCTGAAGTGAAGCGGCTCGAGCAAGAAGCAAGGTTTCTGGAGGAAGAACTGGAACAGCTAGATAAACTGGACAAGGCATCGACAAAATGTAAAGAAATGCTGAGCAATGTGGAGACAAGACCAGACCCTCTTCTCCCACTAACCCATGGCCCCATAAATCCGCTATGGGATCGATGGTTTGAAGGTCCACAAGATTCTAAAGGTTGCAGATGCTGGATATTGTGA 315 46.35 MSQSASPITQRVQSSSSSSSIDTRGKHRIQAEVKRLEQEARFLEEELEQLDKLDKASTKCKEMLSNVETRPDPLLPLTHGPINPLWDRWFEGPQDSKGCRCWIL* 105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10963756 10966449 - CsaV3_2G013330.1 Csa02g01117 519174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01117 104 MobiDBLite consensus disorder prediction 1 24 - -
Csa02g01117 104 Coils Coil 26 53 - -
Csa02g01117 104 Pfam GGL domain 30 104 IPR015898 GO:0007186
Csa02g01117 104 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 2 3 104 - -
Csa02g01117 104 SMART G_gamma_2 30 104 - -
Csa02g01117 104 MobiDBLite consensus disorder prediction 1 29 - -
Csa02g01117 104 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 3 3 104 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01117 K24772 GG1_2; guanine nucleotide-binding protein subunit gamma 1/2, plant - csv:101218730 201.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01117 Csa03g01278 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00013 Csa-Chr2:226421 Csa02g01117 Csa-Chr2:10963756 1.13E-06 dispersed
Csa02g01117 Csa-Chr2:10963756 Csa02g01165 Csa-Chr2:11379212 1.41E-34 dispersed
Csa03g04385 Csa-Chr3:38295127 Csa02g01117 Csa-Chr2:10963756 1.16E-21 transposed
Csa02g01117 Csa-Chr2:10963756 Csa03g01278 Csa-Chr3:9769445 2.23E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g582 Blo01g00107 Blo12g00347 Bda03g00858 Bda08g00260 . . Bma04g00758 Bma05g01087 Cmo08g01093 Cmo17g00193 . Cma14g01761 . Car14g01587 . . Cpe03g01477 Bhi01g00745 Tan10g0772 . Lac12g2240 Hepe05g1598 . Lcy11g1595 . . . . . . . . . . . Lsi05g01650 Csa02g01117 . Cme06g00561 . . . . Bpe05g00877 . . . Sed02g1357 . Cmo14g01801 Cma08g01118 Cma17g00199 Car08g01001 Car17g00176 Cpe12g00170 Cpe17g00167 Bhi12g02247 Tan06g2475 Cmetu05g0135 . Hepe03g0235 . Lcy13g0318 Cla05g00499 Cam05g0547 Cec05g0560 Cco05g0558 Clacu05g0544 Cmu05g0516 Cre05g0584 Lsi09g01286 Csa03g01278 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000959 2 4 2 2 1 2 5 2 2 3 2 2 5 3 3 3 2 3 5 2 3 3 3 3 3 3 3 3 5 1 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01117 Csa_Chr02 FPKM 17.230806 19.250952 22.133945 24.660549 3.538157 3.320249 4.097695 0.165511 0.0 0.152024