Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01125 ATGAGTGCCGGTGCGGCGACGTTCCGGTCTATACTCGACAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCCTCTTGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTTAAAGCATTGCTTGAGCCTTGTGATGATTCCGGCGCCGGCGCTCTCAGGAAGGTCGTCGTTTCGCCTCGGATAAATTCAAATCAAGGTGATTCACCCAAAGAACCGAGTGATGATGCTCAGGTTACAATGTCAGTTGATGAATCTGCTTATAGCAATGTGGAGACTGCGAAATCTACTCCTGAGGATCCCCCGGTTGAACCAGAGAACAATGTTACTAGTCCCAGAGATCAATACGATACAAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTTCCACCAGATAAGGCGTGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATTTCCCTCAGAATCATCCCATGAGTGGAACTGCTGCATGTCAGTCTCCACCATGTCTTTTGCAGACTTCCAGTGACAGAGATGACTTTCTTCCTCCTAGTGCTACCATCTATCGAAATGTGCACACAGAGAAGTTGGGTGAGCACCCTCAGCAGCAGCAGCATGCAAAGGGGACCAGTATGCGGGATTCTGATGTTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAGGACAGGGGAAGGTTAAAGAACAAGAAAAATACAGGATTGTCTTCTCCTAGCCTGGAGGGATATATGAACCATCAAATGAGGACGCACATATCCAATAAGAATTTAGGTCAAATTGTGACGAGCTCTTTATCCCCAACTGGAGTAGCAAAAGCCTTCGTTGGACCAGCTGACAATCAGCCAAAACTTGCATGTTTTTCTGTCGACCTTAATGTCAAAGATATCCAGGAGTGCTGA 1011 46.69 MSAGAATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRKVVVSPRINSNQGDSPKEPSDDAQVTMSVDESAYSNVETAKSTPEDPPVEPENNVTSPRDQYDTNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHFPQNHPMSGTAACQSPPCLLQTSSDRDDFLPPSATIYRNVHTEKLGEHPQQQQHAKGTSMRDSDVEGQASRKVSLQRYLEKRKDRGRLKNKKNTGLSSPSLEGYMNHQMRTHISNKNLGQIVTSSLSPTGVAKAFVGPADNQPKLACFSVDLNVKDIQEC* 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11018865 11024192 - CsaV3_2G013410.1 Csa02g01125 519182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01125 336 MobiDBLite consensus disorder prediction 219 278 - -
Csa02g01125 336 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Csa02g01125 336 MobiDBLite consensus disorder prediction 109 138 - -
Csa02g01125 336 Pfam tify domain 144 172 IPR010399 -
Csa02g01125 336 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 4 305 IPR040390 -
Csa02g01125 336 SMART tify_2 138 173 IPR010399 -
Csa02g01125 336 PANTHER PROTEIN TIFY 4B-LIKE ISOFORM X1 4 305 - -
Csa02g01125 336 Pfam Jas motif 244 261 IPR018467 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01125 Csa-Chr2:11018865 Csa05g02889 Csa-Chr5:29302705 6.31E-06 dispersed
Csa02g01125 Csa-Chr2:11018865 Csa01g03011 Csa-Chr1:26251888 7.63E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30913 PF06200 tify 3.00E-15 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01125 - - csv:101204377 676.781