Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g01125 | ATGAGTGCCGGTGCGGCGACGTTCCGGTCTATACTCGACAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCCTCTTGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTTAAAGCATTGCTTGAGCCTTGTGATGATTCCGGCGCCGGCGCTCTCAGGAAGGTCGTCGTTTCGCCTCGGATAAATTCAAATCAAGGTGATTCACCCAAAGAACCGAGTGATGATGCTCAGGTTACAATGTCAGTTGATGAATCTGCTTATAGCAATGTGGAGACTGCGAAATCTACTCCTGAGGATCCCCCGGTTGAACCAGAGAACAATGTTACTAGTCCCAGAGATCAATACGATACAAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTTCCACCAGATAAGGCGTGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATTTCCCTCAGAATCATCCCATGAGTGGAACTGCTGCATGTCAGTCTCCACCATGTCTTTTGCAGACTTCCAGTGACAGAGATGACTTTCTTCCTCCTAGTGCTACCATCTATCGAAATGTGCACACAGAGAAGTTGGGTGAGCACCCTCAGCAGCAGCAGCATGCAAAGGGGACCAGTATGCGGGATTCTGATGTTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAGGACAGGGGAAGGTTAAAGAACAAGAAAAATACAGGATTGTCTTCTCCTAGCCTGGAGGGATATATGAACCATCAAATGAGGACGCACATATCCAATAAGAATTTAGGTCAAATTGTGACGAGCTCTTTATCCCCAACTGGAGTAGCAAAAGCCTTCGTTGGACCAGCTGACAATCAGCCAAAACTTGCATGTTTTTCTGTCGACCTTAATGTCAAAGATATCCAGGAGTGCTGA | 1011 | 46.69 | MSAGAATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRKVVVSPRINSNQGDSPKEPSDDAQVTMSVDESAYSNVETAKSTPEDPPVEPENNVTSPRDQYDTNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHFPQNHPMSGTAACQSPPCLLQTSSDRDDFLPPSATIYRNVHTEKLGEHPQQQQHAKGTSMRDSDVEGQASRKVSLQRYLEKRKDRGRLKNKKNTGLSSPSLEGYMNHQMRTHISNKNLGQIVTSSLSPTGVAKAFVGPADNQPKLACFSVDLNVKDIQEC* | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 11018865 | 11024192 | - | CsaV3_2G013410.1 | Csa02g01125 | 519182 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g01125 | 336 | MobiDBLite | consensus disorder prediction | 219 | 278 | - | - | |
Csa02g01125 | 336 | ProSiteProfiles | Tify domain profile. | 138 | 173 | IPR010399 | - | |
Csa02g01125 | 336 | MobiDBLite | consensus disorder prediction | 109 | 138 | - | - | |
Csa02g01125 | 336 | Pfam | tify domain | 144 | 172 | IPR010399 | - | |
Csa02g01125 | 336 | PANTHER | PROTEIN TIFY 4A-RELATED-RELATED | 4 | 305 | IPR040390 | - | |
Csa02g01125 | 336 | SMART | tify_2 | 138 | 173 | IPR010399 | - | |
Csa02g01125 | 336 | PANTHER | PROTEIN TIFY 4B-LIKE ISOFORM X1 | 4 | 305 | - | - | |
Csa02g01125 | 336 | Pfam | Jas motif | 244 | 261 | IPR018467 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01125 | Csa-Chr2:11018865 | Csa05g02889 | Csa-Chr5:29302705 | 6.31E-06 | dispersed | |
Csa02g01125 | Csa-Chr2:11018865 | Csa01g03011 | Csa-Chr1:26251888 | 7.63E-09 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30913 | PF06200 | tify | 3.00E-15 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g01125 | - | - | csv:101204377 | 676.781 |