Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01131 ATGGCCATTTCTCTGTTTTGTGATCGTTGGAGAGTTATGGCTTCCATTGTGCTTGCTCTTCCTCTGCTACTCGTCTTTCAATCTGCTAAGGCTGATGATTTAAATGACCTATTGTCTCCTCTTCTCTCCCCCATTTTTGAAAATGTTTGCAAAGAAGTGAACTGTGGGAAGGGAACTTGTAAAACTTCTGGAAATGGGAGCTTCTCGTTTGAATGTGATTGTGATTCTGGATGGAAACAAACTCTTTTTGATGATGATGATACTGATGATGATAGTAATCACTTCAAATTTCTCCCCTGCATCATACCCAAATGTAACTTGACTCACTCGTGCTCTTCGGCACCTCCACCGGGTGTGCAGACCAAACCAAGAACTAACGAAACGATACTTGATCCTTGTAGTTGGGTCGACTGTGGAGGCGGTTTGTGCAACAAGACGTCACCGTTGACATACAAATGTAATTGTTTGGAGGGTTACTATAATCTTCTCAACATCACTGCCTTTCCATGCTACAAAGATTGCTCTATAGGAATGGATTGCAAGGAACTGGGAATTCCAGTAACAAACTCACCTGCTTCTACAACTTCTACTTCAACTACAAATAACAACAATGCTGCTAGCGGATTATTTCTCAAACAAGGCTCCCTCTCAACGATTAGCTCGGTGGTAATGTACGTCGCTACACTGCTTCTTCTGATCATATAG 705 42.13 MAISLFCDRWRVMASIVLALPLLLVFQSAKADDLNDLLSPLLSPIFENVCKEVNCGKGTCKTSGNGSFSFECDCDSGWKQTLFDDDDTDDDSNHFKFLPCIIPKCNLTHSCSSAPPPGVQTKPRTNETILDPCSWVDCGGGLCNKTSPLTYKCNCLEGYYNLLNITAFPCYKDCSIGMDCKELGIPVTNSPASTTSTSTTNNNNAASGLFLKQGSLSTISSVVMYVATLLLLII* 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11070748 11073864 - CsaV3_2G013470.1 Csa02g01131 519188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01131 234 PANTHER NEUROGENIC LOCUS NOTCH-LIKE PROTEIN 16 219 - -
Csa02g01131 234 PANTHER NEUROGENIC LOCUS NOTCH-LIKE PROTEIN 16 219 - -
Csa02g01131 234 SMART egf_5 49 84 IPR000742 -
Csa02g01131 234 SMART egf_5 132 175 IPR000742 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01131 - - - csv:101203161 458.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00326 Csa-Chr2:2220264 Csa02g01131 Csa-Chr2:11070748 1.29E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g549 Blo01g00115 . . Bda08g00247 . Bpe14g01208 . . . . . . . . . . . . . . . . . . Cla06g00606 Cam06g0644 Cec06g0647 Cco06g0650 Clacu06g0631 Cmu06g0625 Cre06g1392 . . Cone7ag0274 Cone4ag0267 . Csa02g01131 Chy05g00389 . Blo02g00522 . . . Bpe05g00889 . . . . . . Cma08g01128 . Car08g01009 . . Cpe17g00160 . . . . . . . . . . . . . . Lsi09g01299 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002595 2 2 1 1 3 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01131 Csa_Chr02 FPKM 109.51136 91.302788 45.253967 37.967793 22.588888 33.732769 20.165686 71.276123 72.756233 54.935379