Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01143 ATGAGAGATGGAAATTCTAAGAAAAGCAAGCTTTCATGGACCAAGACATTATTCAAGAAGTGGCTTAATATCAAGAGCAAATCAGAAGATTTTGAAGCTGACGATAGCGTTAACGGTGGACATGAAAACTGGGAGAGCAGCTATGCAGAGGAGTCATGCGCCGTCAAGAAAAGCCAAACCGAGGGATCAAGCAAGAGGAATTATAATTTTGAATTTGACTCTCCGCAGACCAATGATGTGAACAATTACCGAATCTTTGTAGCTACTTGGAATGTTGCTGGAAAATCTCCTCCAAATCATTTAAGTCTTGATGATTGGCTTCCGAGCTCAACGCCTGCAGATGTATACGTTCTTGGTTTTCAGGAGATTGTTCCTCTGAATGCTGGCAATGTGTTGGGAACAGAAGACAATGGCCCAGCTAAGAAATGGCTTGCTCTTATTAGAAAGACTCTAAATGCTCTCCCTGGCAAAGGTTATCAATCATCTTCACCATTCCCTGATTCATTCACCAATATGGATACAGATTTTGATGGATCCACAAAGCACAAGGCTTTGTCATATTTCCATCGACGATCATTTCAGTCTACTAATAGAAGTATGCGAATGGATAGCATTGCAACACAAAAGGCTCAATTTGATCGACGATTTAGCGATTTTGATCAGGTTATGTTTGGGCATAGACCAAGTGATTATGACCCTACTTGCAGGTGGGGTTCATCTGATGAAGAAAATGAACTGGGGGATTCACCATTTGTTTCCCATTATTCGCCTATTTCCCGCTGTGGTTCCTTCTCCATAGATGATGGAGATAGGCAACTTGGACGATCGAGATATTGTTTAGTTGCCAGTAAACAAATGGTTGGTATATTTCTTACTGTGTGGGTGAAGAGTGAAATGAGAGACGACATTCGCAATTTGAGAGTGTCTTGTGTAGGCAGAGGATTGATGGGTTATCTTGGAAATAAGGGAGCAATCTCAATCAGTATGACAATGCACCAAACAAGCTTCTGCTTCATTTGTAGTCACTTATCGTCGGGGCAGAAGGAGGGTGATGAGCTTAGGAGGAATGCTGACGTTATGGAGATTCTGAGGAAAACTAGATTCCCAAGAGTTAATGGTGTGGAAGATGAGCACTCCCCTCAAACTGTTCTAGAGCACGATCGGGTTATCTGGCTGGGCGATTTGAATTATAGGATTTCCTTGTCTTACCGATCTGCTAAGGCTCTCGTCGAGATGCATAACTGGAGAGCACTGTTGGAGAATGACCAGCTGAGGATAGAACGAAGATGTAGGCGCGTTTTTGAAGGGTGGAAAGAAGGGAAAATCTGCTTCCCTCCAACTTACAAATATTCTTATAATTCAGATAGATACTCTGGAGATGCCCGGTATCCGAAAGAAAAGCGAAGGACTCCTGCTTGGTGTGATCGAATACTGTGGTACGGTAGGGGTTTGAATCAATTGTCTTATGTTCGTGGTGAATCGAGATTCTCAGACCATAGACCAGTTTGCAGTGTGTTTTTGGCTGAAGTTGAGTCTCTAACTCCTAATTGTTTTAAGAAGGGTCTGAGTTATTCCAGTTCAAAGATTGAAGCTGAAGAGCTTTTGCCAAAACACGAATGGCTATTCAAGACGTAA 1635 42.39 MRDGNSKKSKLSWTKTLFKKWLNIKSKSEDFEADDSVNGGHENWESSYAEESCAVKKSQTEGSSKRNYNFEFDSPQTNDVNNYRIFVATWNVAGKSPPNHLSLDDWLPSSTPADVYVLGFQEIVPLNAGNVLGTEDNGPAKKWLALIRKTLNALPGKGYQSSSPFPDSFTNMDTDFDGSTKHKALSYFHRRSFQSTNRSMRMDSIATQKAQFDRRFSDFDQVMFGHRPSDYDPTCRWGSSDEENELGDSPFVSHYSPISRCGSFSIDDGDRQLGRSRYCLVASKQMVGIFLTVWVKSEMRDDIRNLRVSCVGRGLMGYLGNKGAISISMTMHQTSFCFICSHLSSGQKEGDELRRNADVMEILRKTRFPRVNGVEDEHSPQTVLEHDRVIWLGDLNYRISLSYRSAKALVEMHNWRALLENDQLRIERRCRRVFEGWKEGKICFPPTYKYSYNSDRYSGDARYPKEKRRTPAWCDRILWYGRGLNQLSYVRGESRFSDHRPVCSVFLAEVESLTPNCFKKGLSYSSSKIEAEELLPKHEWLFKT* 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11160054 11162654 - CsaV3_2G013590.1 Csa02g01143 519200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01143 544 SUPERFAMILY DNase I-like 75 519 IPR036691 -
Csa02g01143 544 Pfam Endonuclease/Exonuclease/phosphatase family 88 499 IPR005135 GO:0003824
Csa02g01143 544 SMART i5p_5 81 514 IPR000300 GO:0016791|GO:0046856
Csa02g01143 544 Gene3D Endonuclease/exonuclease/phosphatase 65 212 IPR036691 -
Csa02g01143 544 Gene3D Endonuclease/exonuclease/phosphatase 254 534 IPR036691 -
Csa02g01143 544 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 3 540 IPR045849 GO:0004445|GO:0046855
Csa02g01143 544 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 4 3 540 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01143 - - - csv:101215803 1123.23
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01143 Csa03g01308 CCT
Csa02g01143 Csa03g01308 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01143 Csa-Chr2:11160054 Csa07g01687 Csa-Chr7:17360999 0 dispersed
Csa02g01136 Csa-Chr2:11108235 Csa02g01143 Csa-Chr2:11160054 0 proximal
Csa06g00458 Csa-Chr6:3917968 Csa02g01143 Csa-Chr2:11160054 3.88E-147 transposed
Csa06g03174 Csa-Chr6:27015595 Csa02g01143 Csa-Chr2:11160054 3.54E-141 transposed
Csa02g01143 Csa-Chr2:11160054 Csa03g01308 Csa-Chr3:9998205 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g531 Blo01g00119 . . . . Bpe14g01201 . Bma05g01102 . . Cma06g01394 Cma14g01727 Car06g01202 Car14g01558 . Cpe08g00272 Cpe03g01450 Bhi01g00786 Tan10g0815 . Lac12g2261 Hepe05g1571 . . . . . . . . . . . Cone7ag0268 Cone4ag0256 Lsi05g01621 Csa02g01143 Chy05g00400 Cme06g00592 Blo02g00531 Blo07g00227 Bda11g00587 Bda13g00109 Bpe05g00894 Bpe13g00597 Bma02g00832 Bma06g01563 . Cmo06g01398 Cmo14g01766 . . . . . . . . . . . . . Cla05g00524 Cam05g0577 Cec05g0587 Cco05g0585 Clacu05g0573 Cmu05g0543 Cre05g0612 . Csa03g01308 Chy06g00561 Cme05g00471
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000262 3 9 4 3 4 4 7 4 4 4 4 4 7 4 4 7 4 8 7 4 4 4 4 4 4 4 4 12 12 2 153
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01143 Csa_Chr02 FPKM 390.363312 407.982727 559.141479 521.098755 400.637146 433.313019 377.639648 1015.552551 1075.603882 971.661377