Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01145 ATGGAAACCCCCTCAGCTTCAGATTCAAAACGCTCTTATTCATGGTGGTGGGACAGCCACATTAGCCCAAAGACTTCTAAATGGCTTCAAGAAAGTCTTTCAGATATGGATGAAAAAATCAAGCAGATGATCAAAGTTATTGAAGAAGATGCAGATTCCTTTGCAAAGAGGGCTGAGATGTATTACAAGAAGCGTCCAGAGCTTATGAAACTGGTGGAAGAGTTTTATCGGGCGTACCGTGCGTTGGCTGAAAGATACGATCATGCAACCGTGGTGATTCACCAGGCTCATCGAACGATGGCAGAAGCTTTTCCTAATCATATATCCATTGGTAATCCCGATGATGGTTCTGTTGGTTCTGCTTCTGATGTCAATTTTCGTACACCTGATAAATTGTCCCATGTTTGCACCTCGTTCGATTTTGACGCCATGGAACGAGATGCTTTCGACTCACCTGCATTTCATGCTGGCACTGGGGATAAAAACCAAACTTCCAGCAAAGGCTCCAATTTGATGGCAAGGGAGAAATGGTTGAAGCATCTTAATGAGTTGTTTAATTCAGGAGCAACTAAGAAACTTTCAAATTCTGAAGATCGGACGTTGAGAAAAGGTCTCAATTTTCATGATCTCGATCTGAAAGAAAAGAAAATAGAAAGTAACGGGAGCCATGATCTTAAGCATCAAGTATATGTTGAGTCTGAAAGGGTGGACAAAGCTGAGACTGAAATTATATCCTTAAAGAATTCCCTTAGTAAATTAGAAGCTGAAAAGGAAGTAGGTTTGGTTCAATATAACAACAGTTTACAGAGGTTGTCTAAATTAGAGTCCGAAGTCTCCCGAACGCAAGAAGATTCGAGGGGTTTAAACGAAAGAGCTGGTAAGGCAGAGACTGAGGTTCTGATATTGAAAGAGTCTCTTGCAAAGCTAGAGACTGAAAGAGAAACAAGTCTTTTAAGATACCAGCAATGTTTAGATAAGTTATCTACTTTACAAGACAGCATCTTGTGTGTTCAAAAGAACGTTGAAAATACGGAGAGAGCAAGTAAAGCTGAAACTGAAGTTGAAAGACTAAAATGGGAAATTTCAAGAGTTGAATCTCAAAGAGAAGCTGCTCTTGTCCAGTACAGAGAATCTTCTGATATAATTGTAAACTTAGAGGAAAGAGTAGTTCATGCAGAAGAGGATGCTAGAAGGTACAAGGTGCAATCGGATGAAGCTCAGATTGAAGTTCTTACTATTAGGGAAGCGCTCGCACAATTAGTGGAAGAAACAAAAGCTGCTGGTCTCAAACATCATTTATGTACAGAGAAGATTGCTGGTTTGGAACATCAAATCTCTAATGCACAAGATGAGCTAGAAAGGCTACAAGATGAAAAGGATAATGGGTTTGCAAAGTTGAAGGGTGCTGAAGAAAGGTGCCTTCATTTGCAAAGGTCAAATCAAATTCTCCAATCTGAGATGGAGTCTATGGTGCAGAAGATCGGCTCACAAAGTGTAGAATTAATTGAGAAGCAGAAGGAGTTAGGAAGGCTTTGGACTTCCATACAGGATGAGCGTATGCGATATGTAGAGAACAAAACTGCTTTCAGAGCATTGCAAGAACAGCATTCAAAATCTCAGGAAGAAATCAGATCAATGGCTGAAGATAGACAAATTCAGATAAAGACTTTGAAGGAGATGGAAACTCGAAATCAAGTGCTAGAGGATGAAGTTCAGAAGATTGAGGAGGAGAGAAGGAGCTTGAAGGATCTTAACTTGTCTTCAGAGGTGTCGATAAATTGTTTGCGGGATGAGATGTCAAACATGACCACAAATTTGGAAAAACTTGAAGCAAACCTTGAGTTTCAACTCAACCAAAAGAACGCTCTTGAGAAAGAGATTTTATGTCTAAAAGAAGAGCTTAGCGATCTGAAACGGAAGAATTTGATTATGTTGGAGCAGATCCAGTTTGGTGGCTTTGCTCCCGAGAACTTTGGATCGTCTGTTAAAGAACTACGTGATGAGAATTCAAAGATGATAGAGACAATTGAAGTGGAGAAGAGAGAAAAATCAGCTCTCTTGGAGAAATTGAAAGACATGGAAGAACACAGTGAGAAAAATACTCTTCTAGAGAATGCTATCTCAAATTTACACATCGAATTAGAAAGCGAACAGACGAAAGTAAAGGTATTGGAAGAATGCTGTCAACTTCTCTCAGAAGAGAAATCCACTCTTGTAACCGAGAAGGCCTTCTTGTCTTCTCAATTGCAAATGGCTACTGAAAACTTAGAGGGACAGTCAGAGAAGAACACCCTTCTAGAGAGTTCACTTTCTGATGCAAATTTGGAAAGAAAACAACTTGCTGAAAATGTGGAAAAGCTTCACTGTTTGAACAATGATCTTGAAGAGAAAGTAAGATTGTTGGAAGGCAATCTGGAAGATGTGCAATTGAAAAACTTGCATCTCAGGAAGTCATTAGAGAGGTCAGAGCAAGAGCTTTTGGAAGCAGAACAGATTCTGATCATGATGCAGAATGAGAAGTCAGAGTTGCATAAGCGGGTGAAAGAGCTTAGCATTGTGTGCGAAGAGGCTAAAGCGATTGTTGAAGAGAAAGAGAGTGTAATTGTGAAGCTTTCTGGTGATAGCAAACATCTAGTCAGAGAGATAGCATCCCAGCGGGAGCGAAACTGTACTTTGGAAGAGGAACTTGGAAAAGTTCAAGAAGATATTAAGCAGCATAAACACAGGGAGAAAAGTTTGAGGTGTGAGCTAGTGAAGAAGAGAATGGAAGTTGAGATATGTGAGACTCAGGCCGATGAACTGTTTGGTGAGCTCCAAATCTCTAATGTTCATGAAATAGTATTCAAGGAAAAGCTTCTTGAGCTTGATGAAGCGTATGTGAACCTCGAAACTAGAAGTAATTACAGAGATGTGAAGACTGATACGACGAGAGAGAGAATTAATAACATAACCGATCTAAATGGAGAACTAGGAGTCCATTTGGCCAAATATACATCAGCAGTCACATCTTTGAACGATTCCGTATCCTATCTGGAGAATCATACTCTTCTGGGCAGAAAAACACATAAATATGAGAAACAAGAGGATACTCATTCAGTAAATCATCAGTATTCTGAAGGCTATCAGCAAAGATATCACGATCTGATTTCAACACTGCACAATGGAACATTTGAATTGAAGGATTTGCATAGAAGGATTCAGGCTGTGGAAATGGCTGTAATAGAAAAAGTGAAACTTGAAACTCTAGATAACTTGAACTCCGCTGGGAAACAAGAGATGGTGACAAGAAGAATCGAGGAAGCAGCTTGTGGAAATAGTTTGGTCAGAGAAAATGACCAAACAAGGCCTACAACTCCAAGAAGAGAGATTGAACTTGGAAATGAATTGCAGAGATCAATGACAAAAGTCTTTGAAGTTAGTGGTGAAGTATTGACGAAGGACATCATTCTTGATCAAATGGCCAAATGCTCTAATGGGGTTGACAAGAGAGAAGAGAATCTAGATGCTTACAATCAAATGCTGGAACTATGGGAGGCAACTGATGAGGATGGGAGCATTGATCTCATGGTTTGCAAATCTCAGAACATGGCCACTTCCTCAACTAACTATAACAGATTTGAAGTAGTAAAGGAACAGAATAAACGTCGCTCTACCGACTCATTGTTTGAGAAAGAGGTGGGAGTGGACATATTAGAGACCTCAAGTAGATTGTCAGTGCCTCTCCACAGACGAAAAGAGAGGAAGCTTCTTGAAAGGCTTGATTCTGATATGCAGAAATTGACGAACCTTCAAATAACCGTCCAAGATTTAACACGGATTGTGCTTACAAAGCAGAGTAGAAGGAATAATACAGGAGAATATGACACCATGAAAGAGCAACTTGAAGAAGTCGAGGCCGCTGTTATGAAGCTGTTTAATGCCAATTGCAAATTGATGAAGAATGTACAAGATGGCACCCTGTCTTCTGATGGAGCGTCCACCATTGTATCTGATGAAGGTGGAAACGTCCGCAAAAGAATAATATCAGCACAAGCAAGAAGAGGGTCCAAAAAAATTGGGCAGCTGCAACTCGAAGTGCAGAGGTTACAGTTTCTTCTACTTAAACAAGATGAAGAAAAAGAAACGAAGACAAAGACAAAGACGATTGAACGACCTAAAATTCGACTGCAGGATTATCTTTATGGTAGCATTAGAAGCAAGAATAAGAACAAGAAAGCTGCATTCTGTGGATGCATGCATGCCACAATGTCTCCAAGTCCAACAATAGGTGAATGGAGCTATTCAACTTCATTGGTAGGTAATCAGCATAGATTACGTAACTGA 4323 39.95 METPSASDSKRSYSWWWDSHISPKTSKWLQESLSDMDEKIKQMIKVIEEDADSFAKRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATVVIHQAHRTMAEAFPNHISIGNPDDGSVGSASDVNFRTPDKLSHVCTSFDFDAMERDAFDSPAFHAGTGDKNQTSSKGSNLMAREKWLKHLNELFNSGATKKLSNSEDRTLRKGLNFHDLDLKEKKIESNGSHDLKHQVYVESERVDKAETEIISLKNSLSKLEAEKEVGLVQYNNSLQRLSKLESEVSRTQEDSRGLNERAGKAETEVLILKESLAKLETERETSLLRYQQCLDKLSTLQDSILCVQKNVENTERASKAETEVERLKWEISRVESQREAALVQYRESSDIIVNLEERVVHAEEDARRYKVQSDEAQIEVLTIREALAQLVEETKAAGLKHHLCTEKIAGLEHQISNAQDELERLQDEKDNGFAKLKGAEERCLHLQRSNQILQSEMESMVQKIGSQSVELIEKQKELGRLWTSIQDERMRYVENKTAFRALQEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSLKDLNLSSEVSINCLRDEMSNMTTNLEKLEANLEFQLNQKNALEKEILCLKEELSDLKRKNLIMLEQIQFGGFAPENFGSSVKELRDENSKMIETIEVEKREKSALLEKLKDMEEHSEKNTLLENAISNLHIELESEQTKVKVLEECCQLLSEEKSTLVTEKAFLSSQLQMATENLEGQSEKNTLLESSLSDANLERKQLAENVEKLHCLNNDLEEKVRLLEGNLEDVQLKNLHLRKSLERSEQELLEAEQILIMMQNEKSELHKRVKELSIVCEEAKAIVEEKESVIVKLSGDSKHLVREIASQRERNCTLEEELGKVQEDIKQHKHREKSLRCELVKKRMEVEICETQADELFGELQISNVHEIVFKEKLLELDEAYVNLETRSNYRDVKTDTTRERINNITDLNGELGVHLAKYTSAVTSLNDSVSYLENHTLLGRKTHKYEKQEDTHSVNHQYSEGYQQRYHDLISTLHNGTFELKDLHRRIQAVEMAVIEKVKLETLDNLNSAGKQEMVTRRIEEAACGNSLVRENDQTRPTTPRREIELGNELQRSMTKVFEVSGEVLTKDIILDQMAKCSNGVDKREENLDAYNQMLELWEATDEDGSIDLMVCKSQNMATSSTNYNRFEVVKEQNKRRSTDSLFEKEVGVDILETSSRLSVPLHRRKERKLLERLDSDMQKLTNLQITVQDLTRIVLTKQSRRNNTGEYDTMKEQLEEVEAAVMKLFNANCKLMKNVQDGTLSSDGASTIVSDEGGNVRKRIISAQARRGSKKIGQLQLEVQRLQFLLLKQDEEKETKTKTKTIERPKIRLQDYLYGSIRSKNKNKKAAFCGCMHATMSPSPTIGEWSYSTSLVGNQHRLRN* 1441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11187049 11192930 + CsaV3_2G013610.1 Csa02g01145 519202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01145 1440 Coils Coil 529 587 - -
Csa02g01145 1440 Coils Coil 347 409 - -
Csa02g01145 1440 PANTHER PROTEIN NETWORKED 4A 1 777 - -
Csa02g01145 1440 PANTHER PROTEIN NETWORKED 4A 778 1414 - -
Csa02g01145 1440 Coils Coil 1280 1307 - -
Csa02g01145 1440 Coils Coil 662 713 - -
Csa02g01145 1440 Coils Coil 763 839 - -
Csa02g01145 1440 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Csa02g01145 1440 Coils Coil 264 312 - -
Csa02g01145 1440 Coils Coil 236 256 - -
Csa02g01145 1440 PANTHER PROTEIN NETWORKED 1C 1 777 - -
Csa02g01145 1440 PANTHER PROTEIN NETWORKED 1C 778 1414 - -
Csa02g01145 1440 Coils Coil 438 486 - -
Csa02g01145 1440 Coils Coil 1160 1180 - -
Csa02g01145 1440 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Csa02g01145 1440 Coils Coil 1243 1263 - -
Csa02g01145 1440 Coils Coil 592 640 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01145 - - - csv:101216210 2742.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01145 Csa03g01338 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00512 Csa-Chr1:3405378 Csa02g01145 Csa-Chr2:11187049 2.39E-11 dispersed
Csa02g01145 Csa-Chr2:11187049 Csa03g01300 Csa-Chr3:9929551 1.12E-50 dispersed
Csa02g01145 Csa-Chr2:11187049 Csa07g01693 Csa-Chr7:17427361 1.88E-95 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g487 . . . . . . . . . . . Cma14g01701 . Car14g01537 Sed12g0915 . Cpe03g01430 Bhi01g00820 Tan10g0851 Cmetu06g1845 . Hepe05g1544 . Lcy11g1539 . . . . . . . . . . . Lsi05g01597 Csa02g01145 . Cme06g00615 . Blo07g00214 Bda11g00572 . . Bpe13g00611 . Bma06g01551 . . Cmo14g01744 . . . . . . . . . . . . . Cla05g00551 Cam05g0599 Cec05g0610 Cco05g0607 Clacu05g0597 Cmu05g0567 Cre05g0635 . Csa03g01338 Chy06g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009252 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01145 Csa_Chr02 FPKM 20.058214 22.965097 2.364651 3.578718 2.392078 1.563622 2.25571 3.362962 3.620406 4.124179