Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01149 ATGGAAGAGGTTGAAGAAGCTAACAAATCAGCCATTGAGAGCTGCCATGGAGTTTTGAATCTTTTACTTCAACCTCCTCCTTCTCCTCATCATCATCAACACCATTTCAAAAATTTAATGCTTGAAACTAAAGAAGCTGTTTTCAAGTTCAAGAAAGTGATTTCTCTTTTGAACTCTGATTTTAGTCATCCAAGATTTAGAAATTTCAACAAAATCCCTCTCCCTTTACCTCAAAATTCCCTATTGGATTCCCCTAATTACACTCTACATCCTCCAAACAAAAATCTTTTCAATTCCCCCCCTGGTTTTAATAGCAAAGTTTCAATTCTTTTGGGAAACCCAGATTTAGAATTGAGTCAAAATGATAAGAATTCCCTTCATATCCCCAAACAATCTCCTTCTTTAAGCTTTAGCTTCCCCCATCATCATCATCCTCAACAACAACAACAACAACAACAACAGCAACAGAGCCTTCTAGCTCATCAGAAACAAATGAAACACCAAGCTGAAATGATGTTTCTTAGGAATAACAATGGGATGAATCTGAATTTTGATACATCTAACTGTACAATGACAATGTCATCAGCTAGATCTTTCATTTCTTCATTGAGTATGGATGGCAGCGTCATTGGCGACAGAAGCTCGTTTCATTTGATTGGACCGTCAACCACGACCACGACAACGTCAGGCAATAGCAAGAGGAAGTTTTCTGCTAGAGGAGAAGAAGGGAGCTTGAAATGTGGAAGCACTAGTAAATGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATAAAAGTACCTGCCATAAGTAACAAACTTGCAGATATTCCTTCCGATGATTATTCATGGAGAAAATATGGGCAAAAGCCAATTAAGGGTTCTCCTCATCCAAGGGGTTACTACAAATGCAGCAGCATAAGAGGTTGTCCGGCAAGAAAGCATGTCGAGCGGTGCTTAGAAGACCCGTCGATGCTTATTGTAACATACGAAGGAGAACATAATCACCCGAAAATGTCGACGCAATCTGCACACACTTAG 1047 39.35 MEEVEEANKSAIESCHGVLNLLLQPPPSPHHHQHHFKNLMLETKEAVFKFKKVISLLNSDFSHPRFRNFNKIPLPLPQNSLLDSPNYTLHPPNKNLFNSPPGFNSKVSILLGNPDLELSQNDKNSLHIPKQSPSLSFSFPHHHHPQQQQQQQQQQQSLLAHQKQMKHQAEMMFLRNNNGMNLNFDTSNCTMTMSSARSFISSLSMDGSVIGDRSSFHLIGPSTTTTTTSGNSKRKFSARGEEGSLKCGSTSKCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSIRGCPARKHVERCLEDPSMLIVTYEGEHNHPKMSTQSAHT* 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11212968 11215966 - CsaV3_2G013650.1 Csa02g01149 519206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01149 348 MobiDBLite consensus disorder prediction 120 163 - -
Csa02g01149 348 MobiDBLite consensus disorder prediction 120 164 - -
Csa02g01149 348 Pfam WRKY DNA -binding domain 282 339 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa02g01149 348 SMART WRKY_cls 280 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa02g01149 348 Gene3D WRKY domain 267 340 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa02g01149 348 ProSiteProfiles WRKY domain profile. 275 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa02g01149 348 Pfam Plant zinc cluster domain 242 278 IPR018872 -
Csa02g01149 348 SUPERFAMILY WRKY DNA-binding domain 278 340 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa02g01149 348 PANTHER WRKY TRANSCRIPTION FACTOR 74-RELATED 2 348 - -
Csa02g01149 348 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 348 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01149 Csa-Chr2:11212968 Csa07g01660 Csa-Chr7:17076064 8.09E-97 dispersed
Csa02g01149 Csa-Chr2:11212968 Csa04g02431 Csa-Chr4:24478962 1.52E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30915 PF03106 WRKY 2.40E-26 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01149 - - csv:101214847 655.595