Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01155 ATGGGTGGTGATGGGTTTGTAATCCCTGTGGAATCTCAGGTTAGTTCGGTGAAGAAGAAGAAGAAGCAGACTACGACGAAGAAGAAGACTACTGCGGTTTCCAGAAGCTGGGTTTCGTTGGACCGTGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGTCATTATGGAAAGAGTTCAGATTAATGCCAGAGATCTTCGGCTTCTTGATCCTTTGCTGTCCTATCCTTCCACTATCTTGGGTAGAGAAAGAGTAATTGTTCTCAATTTGGAGCATATCAAATCTATTATCACGGCAGACGAGGTGTTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTCGAAGAACTGCAGAGACGGCTGCCTTCGACAAATTCCCTATACCAAGGGCAAGGGGAAGAAGAAGAGCCATCTACCACCCAAAATGAGTTGGCTGAAAACGAATTTCCATTTGAATTTCGTGCTTTAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAATTAGAGACTGATACTTATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGATGATGACGACATGGCAGAACTTTACTTGTCACGTAAAGTAGCTGGCACCCCTGAAAGTGGCTCAGGGACTCCAATCTGGTTTCTTGCTTCTCCTAAGGACTATTCAAAGATCTCTAGAACAAGTAGAGTGAGTGCGATTACTATACGAGGAGAGAATGATGTTGAGGAACTTGAAATGCTACTCGAGGCTTACTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTATATTGATGACACAGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTCATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATACCATACACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCGTGACAGGAATAGTTTGTGCAACCATTTATGTGTCACTAAGCTCATATGCCCGATACAAAGGTCTCGTTGGTTCTTGA 1194 42.13 MGGDGFVIPVESQVSSVKKKKKQTTTKKKTTAVSRSWVSLDREGRSTILDVDKYVIMERVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTNSLYQGQGEEEEPSTTQNELAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGSGTPIWFLASPKDYSKISRTSRVSAITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVIVTGIVCATIYVSLSSYARYKGLVGS* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11253390 11259711 - CsaV3_2G013710.1 Csa02g01155 519212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01155 397 Gene3D - 18 108 - -
Csa02g01155 397 Pfam CorA-like Mg2+ transporter protein 283 382 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Csa02g01155 397 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 333 384 IPR045863 -
Csa02g01155 397 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 6 397 IPR039204 -
Csa02g01155 397 Gene3D Magnesium transport protein CorA, transmembrane region 334 388 - -
Csa02g01155 397 Gene3D Magnesium transport protein CorA, transmembrane region 111 327 - -
Csa02g01155 397 PANTHER MAGNESIUM TRANSPORTER MRS2-LIKE PROTEIN 6 397 - -
Csa02g01155 397 CDD Mrs2_Mfm1p-like 37 394 IPR039204 -
Csa02g01155 397 Coils Coil 200 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01155 K16075 MRS2, MFM1; magnesium transporter - csv:101220452 731.095
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01103 Csa-Chr2:10764690 Csa02g01155 Csa-Chr2:11253390 0 dispersed
Csa02g01155 Csa-Chr2:11253390 Csa03g02968 Csa-Chr3:28242018 8.37E-115 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g02968 . 1 448 MRS2 Gene Family AT1G16010 84.8 8.4e-207 716.5
Csa06g02083 . 6 381 MRS2 Gene Family AT1G16010 52.7 1.3e-106 383.6
Csa07g00672 . 37 298 MRS2 Gene Family AT1G16010 51.1 9.4e-57 218.0
Csa02g01103 . 1 366 MRS2 Gene Family AT5G64560 79.3 5.2e-157 550.8
Csa02g01155 . 1 370 MRS2 Gene Family AT5G64560 69.3 8.4e-131 463.8
Csa07g00672 . 1 321 MRS2 Gene Family AT3G19640 63.2 1.6e-94 343.6
Csa07g00673 . 12 183 MRS2 Gene Family AT3G19640 68.0 5.1e-56 215.7
Csa03g01926 . 59 444 MRS2 Gene Family AT3G58970 69.7 3.0e-140 495.4
Csa06g02083 . 6 381 MRS2 Gene Family AT2G03620 68.5 2.2e-135 479.2
Csa03g02968 . 13 448 MRS2 Gene Family AT2G03620 53.4 3.0e-113 405.6
Csa02g01103 . 1 328 MRS2 Gene Family AT5G09690 75.2 3.1e-126 448.4
Csa02g01155 . 1 332 MRS2 Gene Family AT5G09690 66.0 1.4e-110 396.4
Csa03g02968 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.4e-78 288.1
Csa02g01103 . 23 288 MRS2 Gene Family AT5G09720 67.3 5.2e-88 321.2
Csa02g01155 . 34 292 MRS2 Gene Family AT5G09720 62.8 6.4e-78 287.7
Csa03g02968 . 1 448 MRS2 Gene Family AT1G80900 83.3 4.0e-201 697.6
Csa06g02083 . 6 381 MRS2 Gene Family AT1G80900 54.1 1.2e-104 377.1
Csa07g00672 . 37 304 MRS2 Gene Family AT1G80900 50.4 2.7e-56 216.5
Csa01g01423 . 13 448 MRS2 Gene Family AT5G22830 69.4 4.4e-158 554.7
Csa04g01293 . 25 237 MRS2 Gene Family AT5G22830 53.9 2.6e-49 193.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01155 Csa_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.133164
Csa02g01155 Csa_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0