Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01173 ATGGCTTTCCAGAAGATCGAAGCAACCAATTTCTATACGGTTCTTCTATGGTTTATGGTCTACGCAATAACCCACTGCTTTGCGGAATCGTCGACGTGCTTGATGGTGTACAAGGAAGGCGGCGCTCCGGCGGTATTTCAATCCCCGAAATGCCCTCTGTGGGAGCATTCTGACTACACTTTTCAATCTCCCAACGCCCCTCATTGCCAAATTGCAATGCATCAGGGTCGAAGAAAGTATCAGGAGGATCGCACTCTTTGTGCTCTCGATGTCCGAATTCCCTTCCCAAGTAAAACAGGTCTTATGGAGGTGCCTGTGGGAATTATAGCAGTTTTTGATGGTCATAATGGTGCTGAAGCTAGTGAGATGGCTTCAAAGATTTTGTTGGAGTATTTTGTCGTGCATACTTATTTTCTTCTTGATGCCACTTATTCTGGAATTTTCAAGAGACCCTTTAAGACATTTTCGAATGAGAGGGAACATGGTGCTATCTTTAATCAACTTAGTTGGAGGGACACAATTTGTAACCGTGATCTGGAACTTGGAAGGCTCAAATACTTACTTCCAGCCAATTTTGATGATGATTTTCATTTGGAAATTTTGAAAGAAGCACTGTTGAGAGCTATACAAGATGTTGATAAAACATTTTCCAAGGAAGCACATAAAAATAATCTCGTTTCCGGTTCTACTGCTACTGTTATATTATTAGCCGATGCACAAATTTTGGTTGCAAACATTGGTGACTCAAAGGCTTTCTTGTGCTCTGAAAAATTTCAGTCACCTGCAGAGGCTAAAGCCACCTTTTTAAGGTTATACAAGCAAAAAAGATATAGCGGTGCGTCACGTGCAAGAGGTTATGGAAATTCTCGACCAGATTCATATGATGGGCTGAAGCATTTTTATGTCAAAGAATTGACAAGAGATCATCATCCAGATAGAGAGGATGAAAGATCTAGGGTGGAGATTGCTGGGGGTCATGTTGTTGATTGGGGTGGTGTACCAAGAGTAAATGGTCAGTTGGCAATAAGCAGAGCAATTGGTGATGTGTCTTTCAAAAGTTACGGGGTTATATCTGCACCAGAGGTAACTGACTGGCAACCTTTGTCTGCTAACGATAGCTTTTTGGTGGCTTCATCTGATGGCATTTTTGAGAAACTGAGCTCACAAGATGTTTGTGATTTGTTGTGGGAAATACACAATGATGGCATGTCAAGTTTTGAACATTCTCCTTCATGCTCATACTCACTGGCGGATTGCATTGTTAGCACTGCCTTTGAACGGGGAAGTATGGATAACATGGCTGCTATTGTGGTTCCTTTAAGACCTGCTAGTTCTTCTGGTAGATTTCAGGAGGGGAGCTTTGTTGCACAGAGAGACTCAAGTTTTCCCATATCTGGAATAGAAAATCTTATTAGAGAGCACTCAGGCAAGGGTATCTCTTCCAGTGCCATGCAACTGGAGCATTCTCATCCAGTTATGTCTAAGTTCAACAGATTATTGGTTGAAGGAAGACATAATAATCTGGGATGTTTTTATCTGTCTGAGAATCTGGATGAGTACAAGGATTACATGTTGCGAACTCAAAATGAAGATGAATATGTATGTGATCTACCCCATGCTCTTCCAGATTCCCTCAATCAGCCATATGGTGGATCTGTAAATGTGTACACTGACCAAAGCTTGTGCTTTCATCTTGGGATGATTGGAACTAAAGATCAGTGCTTTAATCCTGAAGGCTTCGCTAATTTTATTGGTTTGCTTGAATCAATTCCTTTTCACGATCCTGGTCCAGATTATCAACTATTTGAGCATTCACCATCTGCATTGAGGTATGTGTTGAAGAAAAGATTTGCTCGTGGTTCCTATGGTGAAGTATGGCTGGCTTTTCATGGAAACTGCCAGGAAGCATTTAGTTCAGTAGGAGAGAATGATAATGTTTCGTGCAACTCATCTTTTGATGCCAGAAACTATGGCTGCTCTTCAAATAGTTCTCAAGCCTATTCTCAGGAGAATAACTTGTTCATCATGAAACGTGTTATGGTTGAAAGAGGTGCCGGAATCTATTTGAGTGGCTTACGGGAGAAATATTTTGGTGAAATATTTCTTAATGCTTCTACCCGCCTGGGAGATGTGTTATCAACTAGAACATCAAACTTTGTCTTTGAAGAATCACCATGGGGATCTAAAGACTTATTGACAAAGGACAAATCACTGCATCATAAAGTAGGGGAAACTAGGCATTTTGAAAATATTTCTCCGAATCGTTTTCAAGGAAAGAGAGTGATCTATGAAGAAGGTTTAAATCATATTGTGAGATATGTTGAATCTTTTGAATCTCGGTCTAATGAAATATGGCTTGTATTTCATTATGAAGGCACTTCCCTCTCGAAGCTCATGTATTCTATTGAAAATGCTGATGAAGAGAAAGTTGAGCAAAAAAACCACGTTCAAATTCTGCGACCTTCTAAGTGGTGGCATTGGCTGAAAACAACAGAAGCAGGACAAGCGGAGATGAAAAATTTGATACGTCAGTTGTTGATGGCACTCAAGTCTTGTCATGACCGCAATATCACTCACAGGGACATTAAACCTGAGAACATGGTGATATGCTTTGAAGATCAGGCTACTGGAAAATGCTTGAATGGAAGTCGAATGGAAGATTGGAACGTCTCTACTAAAATGCGCATTATTGACTTTGGTAGTGCTATTGATGAATTCACAGTTAAGCATCTTTATGGGTCTACGGGGCCTTCTAGAGCGGAACAGACTTATGATTACACACCTCCTGAAGCCTTGCTTAATTCAAGTTGGTATCAGGAAATGTCAGGTGCTACTTTGAAGTATGATATGTGGAGCGTTGGTGTAGTGATGTTAGAATTGATCTTAGGATCACCCAATGTTTTTCAGGTTAGTGATTTAACCCGTGTTCTTTTGGACCAGCATCTTCAAGGCTGGAATGACGGCTTAAAGCAGCTAGCATACAAGCTTAGGTCGTTCATGGAGTTGTGCATTTTAATTCCTGGGAGCTCCTCAAGAAGTTATCAAAAAAATGGTCATCAAGGAGATTCCCCAGCATCCTGGCAATGCTCTGAAGAAGTTTTTGCCCGCCAGATAAAGAGTAGAGACCCTCTTAAACTAGGGTTTCCAAATGTTTGGGCTCTACGATTGGTCCGCAATCTACTACAATGGAATCCAGAGGACCGTTTAAATGTGAATGATGCTTTGCAACATACTTATTTCCACCCTTCTCCTAAAGGAGGATGA 3264 40.93 MAFQKIEATNFYTVLLWFMVYAITHCFAESSTCLMVYKEGGAPAVFQSPKCPLWEHSDYTFQSPNAPHCQIAMHQGRRKYQEDRTLCALDVRIPFPSKTGLMEVPVGIIAVFDGHNGAEASEMASKILLEYFVVHTYFLLDATYSGIFKRPFKTFSNEREHGAIFNQLSWRDTICNRDLELGRLKYLLPANFDDDFHLEILKEALLRAIQDVDKTFSKEAHKNNLVSGSTATVILLADAQILVANIGDSKAFLCSEKFQSPAEAKATFLRLYKQKRYSGASRARGYGNSRPDSYDGLKHFYVKELTRDHHPDREDERSRVEIAGGHVVDWGGVPRVNGQLAISRAIGDVSFKSYGVISAPEVTDWQPLSANDSFLVASSDGIFEKLSSQDVCDLLWEIHNDGMSSFEHSPSCSYSLADCIVSTAFERGSMDNMAAIVVPLRPASSSGRFQEGSFVAQRDSSFPISGIENLIREHSGKGISSSAMQLEHSHPVMSKFNRLLVEGRHNNLGCFYLSENLDEYKDYMLRTQNEDEYVCDLPHALPDSLNQPYGGSVNVYTDQSLCFHLGMIGTKDQCFNPEGFANFIGLLESIPFHDPGPDYQLFEHSPSALRYVLKKRFARGSYGEVWLAFHGNCQEAFSSVGENDNVSCNSSFDARNYGCSSNSSQAYSQENNLFIMKRVMVERGAGIYLSGLREKYFGEIFLNASTRLGDVLSTRTSNFVFEESPWGSKDLLTKDKSLHHKVGETRHFENISPNRFQGKRVIYEEGLNHIVRYVESFESRSNEIWLVFHYEGTSLSKLMYSIENADEEKVEQKNHVQILRPSKWWHWLKTTEAGQAEMKNLIRQLLMALKSCHDRNITHRDIKPENMVICFEDQATGKCLNGSRMEDWNVSTKMRIIDFGSAIDEFTVKHLYGSTGPSRAEQTYDYTPPEALLNSSWYQEMSGATLKYDMWSVGVVMLELILGSPNVFQVSDLTRVLLDQHLQGWNDGLKQLAYKLRSFMELCILIPGSSSRSYQKNGHQGDSPASWQCSEEVFARQIKSRDPLKLGFPNVWALRLVRNLLQWNPEDRLNVNDALQHTYFHPSPKGG* 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11431223 11478887 + CsaV3_2G013890.1 Csa02g01173 519230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01173 1087 ProSiteProfiles Protein kinase domain profile. 611 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01173 1087 SUPERFAMILY Protein kinase-like (PK-like) 767 1082 IPR011009 -
Csa02g01173 1087 PANTHER PROTEIN PHOSPHATASE 2C 50-RELATED 20 597 - -
Csa02g01173 1087 Pfam Protein kinase domain 768 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01173 1087 Pfam Protein phosphatase 2C 200 433 IPR001932 -
Csa02g01173 1087 Gene3D Transferase(Phosphotransferase) domain 1 816 1081 - -
Csa02g01173 1087 SUPERFAMILY PP2C-like 61 441 IPR036457 -
Csa02g01173 1087 CDD PP2Cc 75 440 IPR001932 -
Csa02g01173 1087 ProSiteProfiles PPM-type phosphatase domain profile. 68 440 IPR001932 -
Csa02g01173 1087 Gene3D - 60 445 IPR036457 -
Csa02g01173 1087 SMART PP2C_4 62 438 IPR001932 -
Csa02g01173 1087 PANTHER ALPHABET, ISOFORM E-RELATED 20 597 - -
Csa02g01173 1087 SMART serkin_6 611 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01173 1087 ProSitePatterns Serine/Threonine protein kinases active-site signature. 857 869 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01173 Csa-Chr2:11431223 Csa04g02606 Csa-Chr4:25550564 1.90E-22 dispersed
Csa02g01173 Csa-Chr2:11431223 Csa06g00134 Csa-Chr6:877776 1.31E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77891 PF00069 Pkinase 2.40E-26 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01173 - - csv:101210198 2143.24