Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g01173 | ATGGCTTTCCAGAAGATCGAAGCAACCAATTTCTATACGGTTCTTCTATGGTTTATGGTCTACGCAATAACCCACTGCTTTGCGGAATCGTCGACGTGCTTGATGGTGTACAAGGAAGGCGGCGCTCCGGCGGTATTTCAATCCCCGAAATGCCCTCTGTGGGAGCATTCTGACTACACTTTTCAATCTCCCAACGCCCCTCATTGCCAAATTGCAATGCATCAGGGTCGAAGAAAGTATCAGGAGGATCGCACTCTTTGTGCTCTCGATGTCCGAATTCCCTTCCCAAGTAAAACAGGTCTTATGGAGGTGCCTGTGGGAATTATAGCAGTTTTTGATGGTCATAATGGTGCTGAAGCTAGTGAGATGGCTTCAAAGATTTTGTTGGAGTATTTTGTCGTGCATACTTATTTTCTTCTTGATGCCACTTATTCTGGAATTTTCAAGAGACCCTTTAAGACATTTTCGAATGAGAGGGAACATGGTGCTATCTTTAATCAACTTAGTTGGAGGGACACAATTTGTAACCGTGATCTGGAACTTGGAAGGCTCAAATACTTACTTCCAGCCAATTTTGATGATGATTTTCATTTGGAAATTTTGAAAGAAGCACTGTTGAGAGCTATACAAGATGTTGATAAAACATTTTCCAAGGAAGCACATAAAAATAATCTCGTTTCCGGTTCTACTGCTACTGTTATATTATTAGCCGATGCACAAATTTTGGTTGCAAACATTGGTGACTCAAAGGCTTTCTTGTGCTCTGAAAAATTTCAGTCACCTGCAGAGGCTAAAGCCACCTTTTTAAGGTTATACAAGCAAAAAAGATATAGCGGTGCGTCACGTGCAAGAGGTTATGGAAATTCTCGACCAGATTCATATGATGGGCTGAAGCATTTTTATGTCAAAGAATTGACAAGAGATCATCATCCAGATAGAGAGGATGAAAGATCTAGGGTGGAGATTGCTGGGGGTCATGTTGTTGATTGGGGTGGTGTACCAAGAGTAAATGGTCAGTTGGCAATAAGCAGAGCAATTGGTGATGTGTCTTTCAAAAGTTACGGGGTTATATCTGCACCAGAGGTAACTGACTGGCAACCTTTGTCTGCTAACGATAGCTTTTTGGTGGCTTCATCTGATGGCATTTTTGAGAAACTGAGCTCACAAGATGTTTGTGATTTGTTGTGGGAAATACACAATGATGGCATGTCAAGTTTTGAACATTCTCCTTCATGCTCATACTCACTGGCGGATTGCATTGTTAGCACTGCCTTTGAACGGGGAAGTATGGATAACATGGCTGCTATTGTGGTTCCTTTAAGACCTGCTAGTTCTTCTGGTAGATTTCAGGAGGGGAGCTTTGTTGCACAGAGAGACTCAAGTTTTCCCATATCTGGAATAGAAAATCTTATTAGAGAGCACTCAGGCAAGGGTATCTCTTCCAGTGCCATGCAACTGGAGCATTCTCATCCAGTTATGTCTAAGTTCAACAGATTATTGGTTGAAGGAAGACATAATAATCTGGGATGTTTTTATCTGTCTGAGAATCTGGATGAGTACAAGGATTACATGTTGCGAACTCAAAATGAAGATGAATATGTATGTGATCTACCCCATGCTCTTCCAGATTCCCTCAATCAGCCATATGGTGGATCTGTAAATGTGTACACTGACCAAAGCTTGTGCTTTCATCTTGGGATGATTGGAACTAAAGATCAGTGCTTTAATCCTGAAGGCTTCGCTAATTTTATTGGTTTGCTTGAATCAATTCCTTTTCACGATCCTGGTCCAGATTATCAACTATTTGAGCATTCACCATCTGCATTGAGGTATGTGTTGAAGAAAAGATTTGCTCGTGGTTCCTATGGTGAAGTATGGCTGGCTTTTCATGGAAACTGCCAGGAAGCATTTAGTTCAGTAGGAGAGAATGATAATGTTTCGTGCAACTCATCTTTTGATGCCAGAAACTATGGCTGCTCTTCAAATAGTTCTCAAGCCTATTCTCAGGAGAATAACTTGTTCATCATGAAACGTGTTATGGTTGAAAGAGGTGCCGGAATCTATTTGAGTGGCTTACGGGAGAAATATTTTGGTGAAATATTTCTTAATGCTTCTACCCGCCTGGGAGATGTGTTATCAACTAGAACATCAAACTTTGTCTTTGAAGAATCACCATGGGGATCTAAAGACTTATTGACAAAGGACAAATCACTGCATCATAAAGTAGGGGAAACTAGGCATTTTGAAAATATTTCTCCGAATCGTTTTCAAGGAAAGAGAGTGATCTATGAAGAAGGTTTAAATCATATTGTGAGATATGTTGAATCTTTTGAATCTCGGTCTAATGAAATATGGCTTGTATTTCATTATGAAGGCACTTCCCTCTCGAAGCTCATGTATTCTATTGAAAATGCTGATGAAGAGAAAGTTGAGCAAAAAAACCACGTTCAAATTCTGCGACCTTCTAAGTGGTGGCATTGGCTGAAAACAACAGAAGCAGGACAAGCGGAGATGAAAAATTTGATACGTCAGTTGTTGATGGCACTCAAGTCTTGTCATGACCGCAATATCACTCACAGGGACATTAAACCTGAGAACATGGTGATATGCTTTGAAGATCAGGCTACTGGAAAATGCTTGAATGGAAGTCGAATGGAAGATTGGAACGTCTCTACTAAAATGCGCATTATTGACTTTGGTAGTGCTATTGATGAATTCACAGTTAAGCATCTTTATGGGTCTACGGGGCCTTCTAGAGCGGAACAGACTTATGATTACACACCTCCTGAAGCCTTGCTTAATTCAAGTTGGTATCAGGAAATGTCAGGTGCTACTTTGAAGTATGATATGTGGAGCGTTGGTGTAGTGATGTTAGAATTGATCTTAGGATCACCCAATGTTTTTCAGGTTAGTGATTTAACCCGTGTTCTTTTGGACCAGCATCTTCAAGGCTGGAATGACGGCTTAAAGCAGCTAGCATACAAGCTTAGGTCGTTCATGGAGTTGTGCATTTTAATTCCTGGGAGCTCCTCAAGAAGTTATCAAAAAAATGGTCATCAAGGAGATTCCCCAGCATCCTGGCAATGCTCTGAAGAAGTTTTTGCCCGCCAGATAAAGAGTAGAGACCCTCTTAAACTAGGGTTTCCAAATGTTTGGGCTCTACGATTGGTCCGCAATCTACTACAATGGAATCCAGAGGACCGTTTAAATGTGAATGATGCTTTGCAACATACTTATTTCCACCCTTCTCCTAAAGGAGGATGA | 3264 | 40.93 | MAFQKIEATNFYTVLLWFMVYAITHCFAESSTCLMVYKEGGAPAVFQSPKCPLWEHSDYTFQSPNAPHCQIAMHQGRRKYQEDRTLCALDVRIPFPSKTGLMEVPVGIIAVFDGHNGAEASEMASKILLEYFVVHTYFLLDATYSGIFKRPFKTFSNEREHGAIFNQLSWRDTICNRDLELGRLKYLLPANFDDDFHLEILKEALLRAIQDVDKTFSKEAHKNNLVSGSTATVILLADAQILVANIGDSKAFLCSEKFQSPAEAKATFLRLYKQKRYSGASRARGYGNSRPDSYDGLKHFYVKELTRDHHPDREDERSRVEIAGGHVVDWGGVPRVNGQLAISRAIGDVSFKSYGVISAPEVTDWQPLSANDSFLVASSDGIFEKLSSQDVCDLLWEIHNDGMSSFEHSPSCSYSLADCIVSTAFERGSMDNMAAIVVPLRPASSSGRFQEGSFVAQRDSSFPISGIENLIREHSGKGISSSAMQLEHSHPVMSKFNRLLVEGRHNNLGCFYLSENLDEYKDYMLRTQNEDEYVCDLPHALPDSLNQPYGGSVNVYTDQSLCFHLGMIGTKDQCFNPEGFANFIGLLESIPFHDPGPDYQLFEHSPSALRYVLKKRFARGSYGEVWLAFHGNCQEAFSSVGENDNVSCNSSFDARNYGCSSNSSQAYSQENNLFIMKRVMVERGAGIYLSGLREKYFGEIFLNASTRLGDVLSTRTSNFVFEESPWGSKDLLTKDKSLHHKVGETRHFENISPNRFQGKRVIYEEGLNHIVRYVESFESRSNEIWLVFHYEGTSLSKLMYSIENADEEKVEQKNHVQILRPSKWWHWLKTTEAGQAEMKNLIRQLLMALKSCHDRNITHRDIKPENMVICFEDQATGKCLNGSRMEDWNVSTKMRIIDFGSAIDEFTVKHLYGSTGPSRAEQTYDYTPPEALLNSSWYQEMSGATLKYDMWSVGVVMLELILGSPNVFQVSDLTRVLLDQHLQGWNDGLKQLAYKLRSFMELCILIPGSSSRSYQKNGHQGDSPASWQCSEEVFARQIKSRDPLKLGFPNVWALRLVRNLLQWNPEDRLNVNDALQHTYFHPSPKGG* | 1088 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 11431223 | 11478887 | + | CsaV3_2G013890.1 | Csa02g01173 | 519230 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g01173 | 1087 | ProSiteProfiles | Protein kinase domain profile. | 611 | 1080 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa02g01173 | 1087 | SUPERFAMILY | Protein kinase-like (PK-like) | 767 | 1082 | IPR011009 | - | |
Csa02g01173 | 1087 | PANTHER | PROTEIN PHOSPHATASE 2C 50-RELATED | 20 | 597 | - | - | |
Csa02g01173 | 1087 | Pfam | Protein kinase domain | 768 | 1080 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa02g01173 | 1087 | Pfam | Protein phosphatase 2C | 200 | 433 | IPR001932 | - | |
Csa02g01173 | 1087 | Gene3D | Transferase(Phosphotransferase) domain 1 | 816 | 1081 | - | - | |
Csa02g01173 | 1087 | SUPERFAMILY | PP2C-like | 61 | 441 | IPR036457 | - | |
Csa02g01173 | 1087 | CDD | PP2Cc | 75 | 440 | IPR001932 | - | |
Csa02g01173 | 1087 | ProSiteProfiles | PPM-type phosphatase domain profile. | 68 | 440 | IPR001932 | - | |
Csa02g01173 | 1087 | Gene3D | - | 60 | 445 | IPR036457 | - | |
Csa02g01173 | 1087 | SMART | PP2C_4 | 62 | 438 | IPR001932 | - | |
Csa02g01173 | 1087 | PANTHER | ALPHABET, ISOFORM E-RELATED | 20 | 597 | - | - | |
Csa02g01173 | 1087 | SMART | serkin_6 | 611 | 1080 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa02g01173 | 1087 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 857 | 869 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01173 | Csa-Chr2:11431223 | Csa04g02606 | Csa-Chr4:25550564 | 1.90E-22 | dispersed | |
Csa02g01173 | Csa-Chr2:11431223 | Csa06g00134 | Csa-Chr6:877776 | 1.31E-20 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77891 | PF00069 | Pkinase | 2.40E-26 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g01173 | - | - | csv:101210198 | 2143.24 |