Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01181 ATGATGTTTCTCATGGTGCTCTCCCTTTTATTATCACTTCTCAACAAGTTGAAGAAGATGATGAGTGAGAATTCTATTGTGAGTAAGTTGAAGCCTTATATTCTAGTGGTGAGCCTACAATTTGGAATTGCAGGCATATATGTAATATGCATGGCCACTCTCACTAAAGGCATGAGTCGTTATGTTTTGATCGTGTATCGAAACACTGTTGCCACTCTCTTTCTTGCTCCATTTGCGCTAATCTTCGAAAGGAAAACGAGACCAAAGATGACACTCCCTGTCGCTTTACAAATCATGGTCTTAGGTTTTCTAGAACCCGTAGTTGATCAGGGGTTTGGTTATTTAGGGATGACATACACGTCAGCATCATTCACATCGGCCATCATGAACGCTGTGCCCTCTGTTACCTTTATCATTGCGGTCCTTTTTCGAGTGGAACGTTTAAATGTAAAACAAGTACGAGGGGTAGCCAAGGTAATTGGGACCTTGGTGACCTTCGCCGGAGCTTTGGTTATGACACTTTACAAAGGCCCAATTCTCGATTTCTTTTGGACTCAAAAAACCAACCACCACGTTAACATAGGCGCCGCCGCCACCAATCAGCATTGGGTGGCAGGAACGTTGTTCATCCTTCTGGGCTGCGTGGCTTGGTCTTGTTTCTACATATTACAGTCTATAACAGTAAAGAGATACCCGGCGGAGTTGTCTCTCTCAGCACTGATATGCTTGGCTGGTGCACTTCAGAGCACAGTGATAGCAGTAGCTATTGAGCATCATGCTAGTGCATGGGCTGTAGGCTGGGATTCCAGGCTTCTGGCTCCTCTCTATACGGGAATAGTTGGGTCAGGAATTGCATATTACTTTCAAGCTCTTGTTATGAAGACCAGAGGTCCTGTCTTTGTGACGGCTTTCAACCCTTTATGTATGATCGTTGTCACCATTATCTCTTCCATTGTTCTTGCCGAGAAGATTCACCTTGGAAGCGTTATTGGAGGCCTCATCATCGCAATTGGGCTTTATGCAGTCGTTTGGGGAAAAAGTAAGGATTATTCCACCGCCGACCACCTCCAAAAGCCTAACGGCACCGCCGTACCTGAGCTTCCAATTGTTGCCTCTCAACTCCCCGCCGAACAAGAAGCTCATCTTCAACCTTCAAAATGA 1161 45.39 MMFLMVLSLLLSLLNKLKKMMSENSIVSKLKPYILVVSLQFGIAGIYVICMATLTKGMSRYVLIVYRNTVATLFLAPFALIFERKTRPKMTLPVALQIMVLGFLEPVVDQGFGYLGMTYTSASFTSAIMNAVPSVTFIIAVLFRVERLNVKQVRGVAKVIGTLVTFAGALVMTLYKGPILDFFWTQKTNHHVNIGAAATNQHWVAGTLFILLGCVAWSCFYILQSITVKRYPAELSLSALICLAGALQSTVIAVAIEHHASAWAVGWDSRLLAPLYTGIVGSGIAYYFQALVMKTRGPVFVTAFNPLCMIVVTIISSIVLAEKIHLGSVIGGLIIAIGLYAVVWGKSKDYSTADHLQKPNGTAVPELPIVASQLPAEQEAHLQPSK* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11574373 11583049 + CsaV3_2G013970.1 Csa02g01181 519238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01181 386 PANTHER WAT1-RELATED PROTEIN 29 358 - -
Csa02g01181 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 267 347 - -
Csa02g01181 386 Pfam EamA-like transporter family 43 172 IPR000620 GO:0016020|GO:0016021
Csa02g01181 386 Pfam EamA-like transporter family 206 343 IPR000620 GO:0016020|GO:0016021
Csa02g01181 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 66 174 - -
Csa02g01181 386 PANTHER WAT1-RELATED PROTEIN 29 358 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01181 Csa-Chr2:11574373 Csa04g01808 Csa-Chr4:17728900 6.96E-139 dispersed
Csa02g01181 Csa-Chr2:11574373 Csa04g01463 Csa-Chr4:14463477 4.73E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01181 - - csv:101217521 729.169