Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01191 ATGGCTTCCGACGATATTGCCTTAAACGTTGCACCTTTTTTCATCCTTTACAAAGATGGTCGAATCGACAGGCTCATCGGCAACGATATCGATCCTCCCGGTCTCGACCCCAAAACCGGCGTCGAGACAAAAGACGTCGACATCTCGCCGGACGTCGCCGTTCGTGTTTACAGGCCCAAATCCCCCGACGAAAAACAATCTGAGAAGCTCCCTCTTCTCGTTTACTTTCACGGTGGTGGGTTCTGCATCGAAACCGCATTTTCTCCTTTCTACAACCAGCACATCAGCGCTTGGGTAGCCGAAGCCAACATCGCCGCCGTCTCCGTCAACTACAGGCGAGCACCGGAGCACCAGTTACCGATTCCTTTTGAAGATGCATGGACCGCCATGAAATGGATAGCGTCCCACTCGGAAGGAAAAGGACCGGATGAGTGGCTGAATGAAATCGCAGATCTGAACCAGGTTTATTTAGCCGGAGACAGCGCCGGAGGAAACATGGCACACAGGATGGCGTTGAGGACGGTGACGGAAGGGCTTGAGGGAGTGAAGATCAAGGGATTGCAATTGATTCACCCACATTTTTGGGGGGGAGAATTGCTCGGAGAAGAAAATGATTGGGATCCAAAGGACTTGTTCGTAGTGGAGAACCTGTGGTTTGTAGTATCGAAGGATATAAAGACACTAGATGATCCGATTGTGAACCCAGAGCACGATCCGGATTTGGGGCGGCTACCGGCGGAGAGAGTGGGGATATATGTGGCGGAGAAGGACAATCTGAAGGAGAGGGGAAGGCATTATGCGGAGTGTTTGAAGAAATCAGGATGGGGTGGAACGGTGGAGGTGGTGGAGACGGAAGGCGAAGGACACGTATTCCATCTGTTCAACCCGACGTGTGATATGGCGGGGGAATTGGTGAAACAGCTGGCGGCGTTCATCAAGAGCGGCTGCCGTGGGTAA 957 52.56 MASDDIALNVAPFFILYKDGRIDRLIGNDIDPPGLDPKTGVETKDVDISPDVAVRVYRPKSPDEKQSEKLPLLVYFHGGGFCIETAFSPFYNQHISAWVAEANIAAVSVNYRRAPEHQLPIPFEDAWTAMKWIASHSEGKGPDEWLNEIADLNQVYLAGDSAGGNMAHRMALRTVTEGLEGVKIKGLQLIHPHFWGGELLGEENDWDPKDLFVVENLWFVVSKDIKTLDDPIVNPEHDPDLGRLPAERVGIYVAEKDNLKERGRHYAECLKKSGWGGTVEVVETEGEGHVFHLFNPTCDMAGELVKQLAAFIKSGCRG* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11712303 11713867 - CsaV3_2G014070.1 Csa02g01191 519248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01191 318 SUPERFAMILY alpha/beta-Hydrolases 9 313 IPR029058 -
Csa02g01191 318 Gene3D alpha/beta hydrolase 14 315 IPR029058 -
Csa02g01191 318 PANTHER ARYLACETAMIDE DEACETYLASE 3 313 - -
Csa02g01191 318 PANTHER CARBOXYLESTERASE 2-RELATED 3 313 - -
Csa02g01191 318 Pfam alpha/beta hydrolase fold 73 292 IPR013094 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01191 - - - csv:101208483 645.966
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01191 Csa-Chr2:11712303 Csa04g02391 Csa-Chr4:24227340 4.70E-84 dispersed
Csa02g01191 Csa-Chr2:11712303 Csa02g01192 Csa-Chr2:11722276 6.81E-145 tandem
Csa02g01191 Csa-Chr2:11712303 Csa02g01990 Csa-Chr2:18532526 6.90E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g441 Blo02g00823 . . . . . . . . . . Cma20g00894 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00298 . . . . . . . . . . . Sed01g0344 . . . . . . . . Bhi10g02088 Tan05g1409 Cmetu11g1661 . Hepe08g1072 . . Cla09g01701 Cam09g1797 Cec09g1860 Cco09g1950 . . Cre01g0710 . Csa02g01191 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002370 4 3 1 1 2 2 0 2 2 2 2 2 3 2 2 4 2 2 3 2 2 4 3 1 1 2 1 2 2 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01191 Csa_Chr02 FPKM 80.11248 87.442657 38.808514 36.433754 76.784866 64.183655 79.070206 19.072989 17.402407 19.086937