Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01195 ATGGCTCAGCCTTCAAACGGTGCCGATCTCAATCCCCAGGCTCCTCATCCTCACCACCAATGGTTTCAACAACAACAACAGTATCAGCAGCAATGGATGGCGATGCAGTACCCTGCCGCCGCCATGGCCATGATGCACCAACAGCAGATGGTGATGTATCCTCCTCAGCATTATATGGCGTATTCTCACCATCCTTATCAACAGCAACAACAGCAACAACAGCAGCCGTCGTCGCAACAGCAGCAACAGCATGCTCAGTCGCAGAGACCTCGTAGACAGGGGTCAACGGACGAGGTTAAGACGCTTTGGATTGGTGACCTTCAGCCTTGGATGGACGAGACCTACCTCAATAATTGTTTCGCTCACACCGGCGAGGTTTCCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCGGAGGGCTATGGTTTTGTTGAGTTCTTCTCGCATACGACAGCCGAAAAAGTATTGCAGAATTATAATGGTACTATCATGCCTAATACAGAGCTGCCTTTCCGTCTCAATTGGGCAACCTTTAGTGCAAATGATAGGCGACCAGACACTGGTTCTGACCTATCAATATTTGTTGGTGACTTGGCTGCCGATGTGACTGATGCTATACTGCAAGAAACTTTTTCTAGTAGATACACATCTGTTAAAGGCGCAAAGGTGGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTACGGCTTTGTCAGGTTTGGTGATGAAAATGAAAGGACAAGGGCTATGACTGAAATGAATGGGATTTATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTACGCTTCACAAGCTTTGGTACTGGCCGGTGGACATCCCAATGGCATGGCTGTTCAAGGTTCACAATCAGACAGCGAGTCAAACAACACGACTATATTTGTTGGTGGTCTCGATTCTGATGTTAGTGATGAAGATCTGAAGCAAGCTTTCTCTAAGTTTGGTGACGTTGTCTCTGTGAAAATTCCAATTGGAAAAGGATGTGGATTTGTGCAATTTGCTAACAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAACAAGCAGTGGAGAGGTGATTCAAATAACCAATGGAATGGTGGACGTTATGGTGGGCAAAGCTATGGTGGATATGGTGGCTATTACTCTGTACCACAGCATCAGGACCCAAACATGCATCCCACAGCTGCTGCTGCTGCAGTTAATGGCTCATCTTGA 1314 46.04 MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMVMYPPQHYMAYSHHPYQQQQQQQQQPSSQQQQQHAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCFAHTGEVSSVKVICNKQTGQSEGYGFVEFFSHTTAEKVLQNYNGTIMPNTELPFRLNWATFSANDRRPDTGSDLSIFVGDLAADVTDAILQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYASQALVLAGGHPNGMAVQGSQSDSESNNTTIFVGGLDSDVSDEDLKQAFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS* 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11747886 11760260 + CsaV3_2G014110.1 Csa02g01195 519252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01195 437 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 430 - -
Csa02g01195 437 MobiDBLite consensus disorder prediction 64 90 - -
Csa02g01195 437 SUPERFAMILY RNA-binding domain, RBD 176 285 IPR035979 GO:0003676
Csa02g01195 437 Gene3D - 58 190 IPR012677 -
Csa02g01195 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 180 IPR000504 GO:0003723
Csa02g01195 437 CDD RRM3_NGR1_NAM8_like 310 381 - -
Csa02g01195 437 MobiDBLite consensus disorder prediction 64 98 - -
Csa02g01195 437 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 19 430 - -
Csa02g01195 437 SUPERFAMILY RNA-binding domain, RBD 64 184 IPR035979 GO:0003676
Csa02g01195 437 CDD RRM2_SECp43_like 192 271 - -
Csa02g01195 437 CDD RRM1_SECp43_like 101 181 - -
Csa02g01195 437 MobiDBLite consensus disorder prediction 1 24 - -
Csa02g01195 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 376 IPR000504 GO:0003723
Csa02g01195 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 265 IPR000504 GO:0003723
Csa02g01195 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 171 IPR000504 GO:0003723
Csa02g01195 437 Gene3D - 296 418 IPR012677 -
Csa02g01195 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 272 IPR000504 GO:0003723
Csa02g01195 437 SMART rrm1_1 101 174 IPR000504 GO:0003723
Csa02g01195 437 SMART rrm1_1 194 268 IPR000504 GO:0003723
Csa02g01195 437 SMART rrm1_1 312 379 IPR000504 GO:0003723
Csa02g01195 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 383 IPR000504 GO:0003723
Csa02g01195 437 SUPERFAMILY RNA-binding domain, RBD 302 413 IPR035979 GO:0003676
Csa02g01195 437 Gene3D - 192 269 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01195 - - - csv:101215609 769.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01195 Csa-Chr2:11747886 Csa04g02386 Csa-Chr4:24187265 2.68E-168 dispersed
Csa06g00488 Csa-Chr6:4128153 Csa02g01195 Csa-Chr2:11747886 8.16E-13 dispersed
Csa06g00313 Csa-Chr6:2303174 Csa02g01195 Csa-Chr2:11747886 8.66E-08 transposed
Csa06g01571 Csa-Chr6:13261868 Csa02g01195 Csa-Chr2:11747886 2.00E-09 transposed
Csa02g01195 Csa-Chr2:11747886 Csa02g01994 Csa-Chr2:18563479 3.82E-178 wgd
Csa02g01195 Csa-Chr2:11747886 Csa07g00747 Csa-Chr7:5262014 4.83E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01195 Csa_Chr02 FPKM 15.616857 15.896447 16.300426 14.319916 20.608963 19.691978 21.201164 26.798904 27.177546 30.52858