Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01198 ATGGCTTTCATCAGTTCAAAACTTATCATTCTTTTCATTTGGGCATGCATCTCAACTCTATGCTCTGCCAATAATGGAGGTTGGTTTTGGGGACGACCAAATTGCACTGTGTCTTCCATACCTTGTCATAAGCCATCTCTGCCACCACCATTACGGCGGCTACCACCATCACGATACCCACGAACTCCGCCATCACGACGGTTTCCACCCCCACCATCACGACGTCTTCGAACTCCACCATCACAACGATGTCCCCTGTTGCCACCACCACCACCACCACCACGACATCCTCGAACACCACCACCATCACGACGTCCTCGAACACCACCACCACCACCACCAATGCTATCATCGCCTCCACCACCATCACCGATAGTGTCACCACCGCCACCACAACGACGACCTCGACCACGACCACGTCCACCACCATTCCAACCAATACCACCATCACCGCCGTCATTGCCATCACCATCACCGCCATCTCCATCACCATCATTACCACCCTCACCACAACCAACCCCACAAAGTCCAAGAAAGATCATAGTGGGCGGTTCTAATCAATGGCAGCTTGGCTTCGACTACACTGATTGGGCACTCAAAAATGGTCCCTTTTATGTCAATGATATCCTTGTGTTCAAATATGATCCTCCAAACAGGTCAACTCCACCTCATAATGTTTATCTGCTACCAAACATGAGAAGCCTTGCCAATTGTGATTTTGGAAAGGCCAAAGTGTTGGCAAATATAACGCAGGGAAGTGGAGATGGGTTTGAGTTTGTGCTTAAAGACCAAAATCCTTACTATTTTGCTTGTGGAGAAGGCAATGGCTTCCATTGCAAACTTGGATCCATGAAGTTCACCCTCACACCAATACTCAAGGCTTGA 885 49.04 MAFISSKLIILFIWACISTLCSANNGGWFWGRPNCTVSSIPCHKPSLPPPLRRLPPSRYPRTPPSRRFPPPPSRRLRTPPSQRCPLLPPPPPPPRHPRTPPPSRRPRTPPPPPPMLSSPPPPSPIVSPPPPQRRPRPRPRPPPFQPIPPSPPSLPSPSPPSPSPSLPPSPQPTPQSPRKIIVGGSNQWQLGFDYTDWALKNGPFYVNDILVFKYDPPNRSTPPHNVYLLPNMRSLANCDFGKAKVLANITQGSGDGFEFVLKDQNPYYFACGEGNGFHCKLGSMKFTLTPILKA* 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11776684 11778286 - CsaV3_2G014140.1 Csa02g01198 519255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01198 294 SUPERFAMILY Cupredoxins 179 289 IPR008972 -
Csa02g01198 294 PANTHER GLYCINE-RICH PROTEIN-LIKE 2 293 - -
Csa02g01198 294 MobiDBLite consensus disorder prediction 46 175 - -
Csa02g01198 294 PRINTS Proline rich extensin signature 38 50 - -
Csa02g01198 294 PRINTS Proline rich extensin signature 51 72 - -
Csa02g01198 294 PRINTS Proline rich extensin signature 89 106 - -
Csa02g01198 294 PRINTS Proline rich extensin signature 110 135 - -
Csa02g01198 294 MobiDBLite consensus disorder prediction 46 181 - -
Csa02g01198 294 Gene3D - 177 290 IPR008972 -
Csa02g01198 294 ProSiteProfiles Phytocyanin domain profile. 178 292 IPR003245 GO:0009055
Csa02g01198 294 PANTHER GLYCINE-RICH PROTEIN-LIKE 2 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01198 - - - csv:105434601 273.863
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00308 . . . . . . . . . . . Sed05g3657 . . . . . . . . Bhi10g02079 Tan05g1401 Cmetu11g0840 . . . . Cla09g01710 Cam09g1806 . . . . Cre01g0701 . Csa02g01198 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004690 1 1 0 1 1 1 4 0 0 0 1 0 2 0 1 2 0 3 0 1 1 4 0 3 2 1 2 1 2 6 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01198 Csa_Chr02 FPKM 29.654398 30.497389 28.461176 28.290703 27.784079 25.272558 29.573809 33.142509 29.126844 30.577459