Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01199 ATGCCCATGCCCAGGTGCTTCTTAGACATTACCATAGGCGGAGAGCTTGAAGGAAGAATCATTATCGAGCTTTACAATCACCTCGTTCCTAAAACTGCTGAGAATTTCAGGGCCCTTTGCACTGGTGAGAAAGGCATTTCTCCCAACACCGCTCTTCCTCTCCATTTCAAGGGTGTCTGCTTTCATCGTGTAATCAAAGGGTTTATGATTCAAGGTGGGGACATTTCCGCTGGCGATGGTACTGGGGGAGAATCTATTTATGGTTTGAAATTTGAAGATGAAAATTTTGAACTGAAACATGAAAGGAAAGGAATGTTGTCTATGGCTAACTCTGGTCCCAACACCAATGGGTCTCAATTTTTCATAACAACAACACGTGCACCTCATTTGGATGGAAATCATGTAGTCTTTGGGAAGGTGGTGAAAGGAATGGGAGTAGTTCGTTCAATTGAACATGTTATAACCGGTGAGAATGATCGTCCAACTCTTGATGTTGTAATTGCGGATTGTGGAGAAATCCCTGAAGGGGCGCATGATGGAGTGTCAAATTTGTTCAAGGACGGTGATACCTTTCCTGATTGGCCAGCTGATCTAGACCAGAGTCCTTTTGAACTTTCTTGGTGGATGAGCGCTGTGGATTCTATCAAGGCTTTTGGTAATGTACATTTTAAGAAGCAAGATTACAAGATGGCTCTCAGAAAGTACAGGAAGGCTTTGCGATATCTTGACATTTGCTGGGAGAGAGAAGGGATTGATGAAGAGAAGAGTACGTGTCTGAGGAAGACCAAATCGCAGATATTCACAAACAGCTCTGCTTGTAAACTGAAGTTAGGGGATCTAAAGGGAGCATTATTGGACACTGAATTTGCAATTCGTGAAGGGGTGAACAATGTAAAAGCGGTGTTCCGCCAAGGCCAGGCACACATGGCTCTTAATGACATTGATTCTGCAGTTGAAAGCTTTAAAAGGGCATTGGATTTGGAGCCAAATGATGCTGGAATAAAGAAAGAGCTGGCTGCTGCTAAGAAAAAGATCGCTGATAGACGTGATCAAGAGAGGAAAGCATATGGCAAGATGTTCCTATAG 1086 43.37 MPMPRCFLDITIGGELEGRIIIELYNHLVPKTAENFRALCTGEKGISPNTALPLHFKGVCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRAPHLDGNHVVFGKVVKGMGVVRSIEHVITGENDRPTLDVVIADCGEIPEGAHDGVSNLFKDGDTFPDWPADLDQSPFELSWWMSAVDSIKAFGNVHFKKQDYKMALRKYRKALRYLDICWEREGIDEEKSTCLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAIREGVNNVKAVFRQGQAHMALNDIDSAVESFKRALDLEPNDAGIKKELAAAKKKIADRRDQERKAYGKMFL* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11781859 11788137 - CsaV3_2G014150.1 Csa02g01199 519256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01199 361 ProSiteProfiles TPR repeat region circular profile. 298 331 - -
Csa02g01199 361 CDD cyclophilin_ABH_like 4 171 - -
Csa02g01199 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Csa02g01199 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Csa02g01199 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Csa02g01199 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Csa02g01199 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Csa02g01199 361 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Csa02g01199 361 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Csa02g01199 361 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Csa02g01199 361 SMART tpr_5 212 245 IPR019734 GO:0005515
Csa02g01199 361 SMART tpr_5 298 331 IPR019734 GO:0005515
Csa02g01199 361 Gene3D Tetratricopeptide repeat domain 208 361 IPR011990 GO:0005515
Csa02g01199 361 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 360 - -
Csa02g01199 361 Gene3D - 2 179 IPR029000 -
Csa02g01199 361 SUPERFAMILY TPR-like 212 356 IPR011990 GO:0005515
Csa02g01199 361 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Csa02g01199 361 SUPERFAMILY Cyclophilin-like 2 173 IPR029000 -
Csa02g01199 361 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 360 - -
Csa02g01199 361 Pfam Tetratricopeptide repeat 299 331 IPR013105 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01199 K05864 PPID, CYPD; peptidyl-prolyl isomerase D [EC:5.2.1.8] - csv:101207288 703.745
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01199 Csa07g00780 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01199 Csa-Chr2:11781859 Csa07g00082 Csa-Chr7:779944 4.30E-61 dispersed
Csa05g02871 Csa-Chr5:29027477 Csa02g01199 Csa-Chr2:11781859 3.49E-59 dispersed
Csa01g01454 Csa-Chr1:10176111 Csa02g01199 Csa-Chr2:11781859 7.90E-39 transposed
Csa03g03444 Csa-Chr3:30954353 Csa02g01199 Csa-Chr2:11781859 1.46E-38 transposed
Csa04g02556 Csa-Chr4:25186013 Csa02g01199 Csa-Chr2:11781859 5.44E-24 transposed
Csa06g03023 Csa-Chr6:26036788 Csa02g01199 Csa-Chr2:11781859 6.94E-33 transposed
Csa07g01677 Csa-Chr7:17231880 Csa02g01199 Csa-Chr2:11781859 6.59E-73 transposed
Csa07g01916 Csa-Chr7:18991201 Csa02g01199 Csa-Chr2:11781859 4.99E-15 transposed
Csa02g01199 Csa-Chr2:11781859 Csa07g00780 Csa-Chr7:5474811 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g464 . . . . . Bpe12g00062 . . . Cmo11g01347 . Cma20g00888 . Car20g00765 . Cpe04g00267 . Bhi05g01141 . . . Hepe02g0569 . . Cla02g00581 Cam02g0614 Cec02g0613 Cco02g0629 Clacu02g0610 Cmu02g0607 Cre02g0938 . Cone8ag1151 Cone3ag1116 Cone10ag1127 Lsi10g00310 Csa07g00780 Chy11g00439 Cme01g00031 . Blo13g00569 Bda15g00028 . . . . . Sed05g3656 . Cmo20g00895 Cma11g01765 . Car11g01085 . . . Bhi10g02077 Tan05g1396 Cmetu11g0215 . Hepe08g1064 . . Cla09g01711 Cam09g1807 Cec09g1868 Cco09g1961 . . Cre01g0699 Lsi11g01025 Csa02g01199 Chy01g00036 Cme11g00511
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002414 1 5 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 2 6 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01199 Csa_Chr02 FPKM 4.372789 4.683454 1.656468 1.328639 0.831166 0.700368 1.131043 0.677065 0.628046 0.797533