Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01200 ATGCCTCCCAACACTCCCATTTTCCTCTCTTTTTTCTTCCTAATTTTTATCTTCTTCTTTGAACCATCTAGGGCTTACATCGAGCTTAGACCTGACTTTTACGATGAGTCGTGCCCCCGTTTGCCGATGATAATTCGGTATCATATTTGGGCTGCTGTCCAAAATGACTCTAGAATGGCTGCCTCACTGTTGCGGTTGAACTTCCACGACTGCATTGTAGACGGATGTGATGCATCGGTACTACTTGATGATACAACAGAAATGAAAGGTAACGTGAAATCGCTTCGAGGATTTGAAGTGATTGATGGAATAAAAGCAGACCTAGAAGCATATTGCCCACAGACAGTTTCATGTGCTGATATTGTGAATCTTGCAGCCAGAGAAGCTGTGTATTTGGTTGGAGGGCCATTTTGGCACCTTCCACTGGGACGTAGAGATGGTTTAACCGCAAGCATAAAATCAGTGCTGGCTCAGCTCCCATCTCCCAAGGCATCTCTAGAGAACAACACCGCCAAGTTCATCTCAAAAGGTCTGGACTTAAAGGATCTCGTCGTGCTTTCAGGAGCCCACACCATCGGCTTCGCCCGCTGCGTAACATTCAAAGGCCGTCTCTTCAACTTCAAAGGCTCCGGGAACCCAGATCCTGACATAAACGCCGCAATGCTCACCGACCTCCGGTCCATGTGCCCCAACAGGAACGACGGCACCGGCGCCAATTTGGCGCCGCTGGATGTGGCCAGTTACGACAGGTTCGACAACGAGTATTTTACCAATCTGATTGGCAATGTTGGGCTTTTAGAGTCGGATCAGGGTCTGATGGCGGACCCCCAGACGGGGAGAATGGTTAGAGAATACAGTTTTGATCCGAATCTGTTCTTCGAGGACTTTGCAGAGTCGATGTTCAGGATGAGTTTGGTTGGGGTAATGACTGGCCGTGAAGGGCAGATTCGAAAGCAATGTGGCGTTGTTAATAATGATGATGGTTATTGA 990 48.18 MPPNTPIFLSFFFLIFIFFFEPSRAYIELRPDFYDESCPRLPMIIRYHIWAAVQNDSRMAASLLRLNFHDCIVDGCDASVLLDDTTEMKGNVKSLRGFEVIDGIKADLEAYCPQTVSCADIVNLAAREAVYLVGGPFWHLPLGRRDGLTASIKSVLAQLPSPKASLENNTAKFISKGLDLKDLVVLSGAHTIGFARCVTFKGRLFNFKGSGNPDPDINAAMLTDLRSMCPNRNDGTGANLAPLDVASYDRFDNEYFTNLIGNVGLLESDQGLMADPQTGRMVREYSFDPNLFFEDFAESMFRMSLVGVMTGREGQIRKQCGVVNNDDGY* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11798159 11800967 - CsaV3_2G014160.1 Csa02g01200 519257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01200 329 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Csa02g01200 329 Pfam Peroxidase 47 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 Gene3D Peroxidase, domain 2 160 303 - -
Csa02g01200 329 CDD secretory_peroxidase 28 323 IPR033905 GO:0004601|GO:0042744
Csa02g01200 329 ProSiteProfiles Plant heme peroxidase family profile. 28 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 Gene3D - 32 324 - -
Csa02g01200 329 PANTHER PEROXIDASE 72-RELATED 13 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 SUPERFAMILY Heme-dependent peroxidases 29 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa02g01200 329 PANTHER PEROXIDASE 10 13 323 - -
Csa02g01200 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01200 Csa-Chr2:11798159 Csa04g01360 Csa-Chr4:13778724 2.81E-100 dispersed
Csa02g01200 Csa-Chr2:11798159 Csa06g02923 Csa-Chr6:25335342 3.69E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01200 K00430 - csv:101209504 651.358