Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01207 ATGCATAATTTGAATCTCCTTCTCCTCTTCTTCTTCTTCTTCTTCCTCTTTCTTTCTCCCACACTAACCAAATCCCTATCAGATCCGCCGCCTAGCACCGACGTAGGCGGCGGTGGAGGAAAGCACTTCGTCCTAGTTCACGGAGCCTGCCTGGGGGCCTGGTCGTGGTACAAGCTATCAACGCTGCTCCGATCGGCGGGGCATCGGGTGACAGCGTTAGACATGGCGGGGGCTGGAATTGATCCCCGGGAGGCGGAGAGGCTGAAATCGTTCAACGAATACGTTGAGCCGTTGAGAAATTTGATGGGGGAGGTGGGGGAGGAGGAGAAGGTGATTCTGGTAGGACACAGCCAAGGCGGGCTTTGCATATCGAAGGCAATGGAGGAATTTCCGGAGAAAATATCTGTTGCGGTTTTTGTGGTTGCCGCTATGCCTGGCCCAGCCCTAAACGCTTCATTTCTAATTGGACAGTTACGGAAGTGGTTAGATTTTGGGCCAGACAGCCATTATACATATGGTAATGGGCCAAGAAGCCCACCAACAACTTTGACATTTGGGCCATTGTTCTTGGCCGCAAAAGTATTCAACAAAAGCCCCCTGGAGGACTTGACATTAGGGAGGACATTGGTGAGACCAACCCATCTGTTTGGTGGAGAGCAATGGAACAAAGATTTAGTTTTGACAAAGGAGAGATATGGGTCTGTCAAAAGAGTTTTTGTTGTTTCGGATAATGATAAGGTCATCAAGAAAAGCTTCCAAAAATGGGTTATTCGTAGAAACCCACCTGATGGTGTTGTGGAAGTTAAAGGATCTGATCATATGGTCATGATGTCTAAGCCTTTGCATCTCTTCAACATACTTTCACACATTGCTCGTCAACATTCTTAA 888 48.09 MHNLNLLLLFFFFFFLFLSPTLTKSLSDPPPSTDVGGGGGKHFVLVHGACLGAWSWYKLSTLLRSAGHRVTALDMAGAGIDPREAERLKSFNEYVEPLRNLMGEVGEEEKVILVGHSQGGLCISKAMEEFPEKISVAVFVVAAMPGPALNASFLIGQLRKWLDFGPDSHYTYGNGPRSPPTTLTFGPLFLAAKVFNKSPLEDLTLGRTLVRPTHLFGGEQWNKDLVLTKERYGSVKRVFVVSDNDKVIKKSFQKWVIRRNPPDGVVEVKGSDHMVMMSKPLHLFNILSHIARQHS* 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11888042 11891642 - CsaV3_2G014230.1 Csa02g01207 519264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01207 295 SUPERFAMILY alpha/beta-Hydrolases 36 293 IPR029058 -
Csa02g01207 295 PANTHER METHYLESTERASE FAMILY MEMBER 37 293 IPR045889 -
Csa02g01207 295 Pfam Alpha/beta hydrolase family 43 283 IPR000073 -
Csa02g01207 295 PANTHER ESTERASE PIR7A-RELATED 37 293 - -
Csa02g01207 295 Gene3D alpha/beta hydrolase 40 295 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01207 - - - csv:101207795 570.852
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01207 Csa07g00789 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02587 Csa-Chr1:22858333 Csa02g01207 Csa-Chr2:11888042 1.23E-37 dispersed
Csa02g01207 Csa-Chr2:11888042 Csa07g00793 Csa-Chr7:5551757 1.33E-82 dispersed
Csa02g01207 Csa-Chr2:11888042 Csa06g02905 Csa-Chr6:25226076 1.07E-64 wgd
Csa02g01207 Csa-Chr2:11888042 Csa07g00789 Csa-Chr7:5540440 1.17E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g475 . . . . . . . . . . . . . . Sed08g2645 . . Bhi05g01157 Tan02g0874 Cmetu01g0432 . . . . . . . . . . . . Cone8ag1158 . . . Csa07g00789 . . . . . . . . . . . . . Cma11g01774 . . . . . . . . . . . . Cla09g01724 Cam09g1820 Cec09g1880 Cco09g1973 . . . . Csa02g01207 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01207 Csa_Chr02 FPKM 83.471817 85.143387 202.543564 196.054489 39.981941 37.67506 42.439453 182.332565 197.53801 237.400223