Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01210 ATGCGGCCGATGAGGATAATGATCGTGGCTTTGGTTGTGACGCTGTTGCTTTTGGTTGTGGAAGGAATCGATACGAACGATGTGTATAGTCCATGTTTAGATTCAAAGATTCAGAGATCTGATGGATTTACATTTGGTGTAGCGTTTTCTTCTAAAGAATCATTCTTCCAGGATCAGATTCAATTTTCTCCTTGTGATACTCGTCTGTCTTTGGCTTCTAAAATGGCTCAGCTCGTCGTGTTTAGACCTAAGGTCGACCAACTCTCGTTTCTCACCATTAATTCCTCCACCTTCAATCCGGCTTTGAATGGTGGGTATATGGTAGCATTTGCTGGGCAAAAGTATGCAGCAAGATCTCTCCCAGTAATGATCACTGATAATTCTAATACCATAACTAGTTTCACTTTGGTTCTTGAATTTCAAAGGGGAATTCTTCAAAACCTGTTTTGGAAGAAATTTGGATGTGACAAATGCAGTGGGGATTTCTCATTATGCGTGGACAACCAAGACTGTGCAATTCCAAACTCCAAATGTAAGTACAATGGTGGTTCTGTTGATTGCAATTTAGGCATACAACTTGCATTTTCAGGGACAGATAAGAACCTGGAAGTCCTCAACTCCTGGTATGAAGTCGACAATCTCAGACGTTTCTCCCTCTACCAGCTTTTCTCTGATGTTCGTGATACGGTCACCAACCCATTCGGTTAA 708 41.53 MRPMRIMIVALVVTLLLLVVEGIDTNDVYSPCLDSKIQRSDGFTFGVAFSSKESFFQDQIQFSPCDTRLSLASKMAQLVVFRPKVDQLSFLTINSSTFNPALNGGYMVAFAGQKYAARSLPVMITDNSNTITSFTLVLEFQRGILQNLFWKKFGCDKCSGDFSLCVDNQDCAIPNSKCKYNGGSVDCNLGIQLAFSGTDKNLEVLNSWYEVDNLRRFSLYQLFSDVRDTVTNPFG* 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11901048 11903902 - CsaV3_2G014260.1 Csa02g01210 519267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01210 235 PANTHER - 3 234 - -
Csa02g01210 235 PANTHER DPH3 HOMOLOG-RELATED 3 234 IPR044248 GO:0017183|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01210 - - - csv:101222204 462.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01210 Csa-Chr2:11901048 Csa03g03506 Csa-Chr3:31392304 3.68E-89 dispersed
Csa02g01210 Csa-Chr2:11901048 Csa06g02475 Csa-Chr6:22028636 4.62E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g502 . . Bda06g01029 . Bpe07g00399 . . Bma12g00480 . . Cma02g00431 Cma20g00885 Car02g00286 Car20g00762 . . . . . . . . . . . . . . . . . . . . Cone10ag1129 Lsi10g00321 . Chy11g00425 . . . . . . . . . . Cmo02g00433 Cmo20g00892 . . . . . Cpe05g01231 . . . . . . . Cla09g01729 Cam09g1823 Cec09g1883 Cco09g1976 . . Cre01g0685 . Csa02g01210 . Cme11g00494
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009804 2 0 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01210 Csa_Chr02 FPKM 47.741531 41.392075 11.223198 8.910996 13.848049 13.956204 16.588497 3.152583 2.153687 2.008739