Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01212 ATGCCGCGCCCTCATTTTCATAAGCTTGTTCTCACCTCAACTATCCAAGCTAGGAAATTGAGAATCCCAGAAACTTTTGTCAGGATGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCTGATGGCCATGTTTGGCGTGTAGGTTTGAGGAAAGCCGACAATAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCAATACGGGTTGGGTATTTACTAGTATTCAGATATGAGGGAAACTCATCGTTCTGTGTTTTTATCTTTAATCTTAATACATCTGAAATAAACTATCAATCGGCTGCTCTCAGTAATAATCAAAGGAATAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGATATTCCTGAAGCCATTCCTTCCAATCAGTCCATGAATTCCGGTTCCTTGCGGAATAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACATTACAAGCTGAGTATTTATCTACTAGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCACACAGAGTTAAAAAGAGTGGAAGCAAAAAGCGAAAAATCGAGTCTAGCGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGACATTCGTTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACTCTGCAAAAGCTTTCGAGCCTGGTAATCCTTTCTGCAGAGTCGTCTTGCGACCATCCTATCTATATAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCGGGATTCATCAAACTTCAGACGCCTGATGGGAGACAGTGGCCGGTCCGATGCCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTACGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGCGATGTTTGTGTGTTTGAGCTTCTTAGGATGAGAGAAATTGTACTCAAAGTTACCATGTTTCGTGTCATTGAAGAAGGCGGACGAATGGCAAACCCAAATCCTGCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCACATTAAGCTGATCAGAAATTAA 1194 41.04 MPRPHFHKLVLTSTIQARKLRIPETFVRMIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSSFCVFIFNLNTSEINYQSAALSNNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDAAHRVKKSGSKKRKIESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGGRMANPNPASMMNPPPLRSVSHIKLIRN* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11910406 11913433 + CsaV3_2G014280.1 Csa02g01212 519269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01212 397 ProSiteProfiles B3 DNA-binding domain profile. 271 366 IPR003340 GO:0003677
Csa02g01212 397 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 214 395 - -
Csa02g01212 397 Pfam B3 DNA binding domain 8 95 IPR003340 GO:0003677
Csa02g01212 397 Pfam B3 DNA binding domain 274 364 IPR003340 GO:0003677
Csa02g01212 397 Gene3D - 1 99 IPR015300 -
Csa02g01212 397 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 152 - -
Csa02g01212 397 MobiDBLite consensus disorder prediction 201 229 - -
Csa02g01212 397 CDD B3_DNA 269 364 IPR003340 GO:0003677
Csa02g01212 397 SUPERFAMILY DNA-binding pseudobarrel domain 3 98 IPR015300 -
Csa02g01212 397 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Csa02g01212 397 SMART B3_2 271 366 IPR003340 GO:0003677
Csa02g01212 397 SMART B3_2 6 98 IPR003340 GO:0003677
Csa02g01212 397 PANTHER B3 DOMAIN-CONTAINING 214 395 - -
Csa02g01212 397 SUPERFAMILY DNA-binding pseudobarrel domain 266 365 IPR015300 -
Csa02g01212 397 PANTHER B3 DOMAIN-CONTAINING 1 152 - -
Csa02g01212 397 CDD B3_DNA 4 96 IPR003340 GO:0003677
Csa02g01212 397 Gene3D - 248 368 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01212 Csa-Chr2:11910406 Csa06g02897 Csa-Chr6:25178501 2.62E-21 dispersed
Csa02g01212 Csa-Chr2:11910406 Csa02g01213 Csa-Chr2:11920558 1.08E-60 tandem
Csa04g00448 Csa-Chr4:2804626 Csa02g01212 Csa-Chr2:11910406 2.58E-32 transposed
Csa02g01212 Csa-Chr2:11910406 Csa02g02009 Csa-Chr2:18638520 2.19E-33 wgd
Csa02g01212 Csa-Chr2:11910406 Csa06g02895 Csa-Chr6:25161690 6.95E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30921 PF02362 B3 5.40E-18 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01212 - - csv:101213446 796.578