Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01217 ATGGCTGGGATTCTTAAAAAACTTTTTCACGAGAAGCCTTCTTCTCCTGTTAATCATGTGGATTTTACTGGTGAATATTCTTTTGCCATGGAGTATAAAGGTCCTGGAATTAGTTACGAGATTCCTCGTGCAGTTCCTATAAATGTTGATTATATTCCAACGGCTTCTGTGGTTCTTTCATCATCTCAATTCAGTGATGATTTATCATCTCTGCCTGTGATACAACCCATTGTTAAGAAACTAAAGAAGGGTTCAAGTTCCAGCCCTAATTCTGTAATTTCTTCAACTTCAGAAATCCAGGAAGATGGGGTTGTTTGCCTCCATGCCAATAAGGAAGATAAATGTAATATCGATTCGTGTGATGGAGTTGAAAGTTCTGGTGAACTTGAGAATTTCAATGAGCTGAAAGGAAGAATAGGAGGGGTAGAATCATTGGAAATTAAGAATGAAGAGGATTTTCAAGGCTATACGAATTCCAGCGACTCGGAATCAGTAGAATCGGGTTTGAGTTCGTCTTCTGGAATTTTTGCTGTAAGAGAGGAAGAGGAAGTTGACTATGAAACTACGCGTAGGCATGGCAGAAGGCCATCAGCTGTTACCTTTCTTGATCCCCATACGAGCAACACGATTTCTGAAGAGGCTGAGTCAAGTCAATTTGAGGGTGAAAGCATTCAAGAGATGCCTCGAGCTGAAAGGAAGGGAAAAAAAGGATCATGCTACTTCTGCCTTAAAGGAAACCGTTTCACTGAAAAGGAAGTATGCATTGTTTGTGGAGCCAAATATTGCTTTGATTGTATAATCAGAGCAATGGGAGCAATGCCAGAAGGAAGGAAGTGTATCTCTTGCATTGGGTATAGGATTGATGAATCAAGAAGGGAGAACTTGGGTAAAAGCTCTAAAGTGCTCAAGAGGTTGCTTTCTGACTATGAAATTAAGAGCGCAATGTTGCATGAGAAAGAGTGTGAAATAAACCAACTACCAGCAAGACTTATCTACGTCAATGGCGATCCTTTAAGTCGACAGGAACTGCTTACGTTGCGAAGTTGTCGAAAGCCACCAAAGAATCTAAAACCAGGACAATATTGGTATGACAAAGAATCAGGCTTCTGGGGAAAGGAAGGACATGGACCGAGTCAGATAGTTAGCTCCCAGCTAGAAGTTGGAGGTCGGATCAAGAGGAATGCTAGCAATGGCAATACGAATGTGTGCATCAATAATCGAGAGATCACTAAAAACGAGCTCCGGATACTGAAGCTGGCTGGAGTGCCTTGTGAAGGAAGACCTTCTTTTTGGGTTAGTGCAGATGGATCATACCAGGAAGAAGGAATGAACAATGGGGGAAAAATATGGGACAAGACTAGAACGAGGCTTGCATGTGCCCTTTATTCTTTGCCTATTCCTTCTAATTCTGTTCGTACTGGAGAGGAAATAGAGGACGGAGCTAAATCTGTTTCTTACGAGCAGAAAGTACTTCATAAACTTCTCCTTGTTGGCCACAAAAAATCTGGCACGAGTACCATATTCAAGCAGGCCAAACAAATATATAAAGTTCCTTTCTCTGATGACGAGCGTCAAACAATTAAGTTACTGATTCAAAGGAACTTGTATTGGTATCTTACTATACTACTGGAAGGACGAGAGCGTTTCGAAGAAGAGATTTTGATGGATGAGAAAAATAAACAACCAGTGAATGATCCGTCCAGCTCATCAGCATCAGGGAATGAAAATCAGTTGGAGCGTAAGGACATCTATTCCCTTGGCCCTAAACTGAAAGGATTTGCAGATTTGCTTCTTCAAGTCGTGGTGTCAGGGAACTTTGACACCATATTCCCGGCTGCTACACGTGTGTATGGTCAATTAGTGGAAGAGTTGTTGAAGGATGAAGCCTTCCAAGCCACGTACAGTAGAAGGAACGAACTAGAAATGCTCCCACGAGTTGCTACTTATTTCCTTGATCGGGCAATTGACATTTCAAGCATAGAGTATGACCCTTCTGACAATGATATCTTGTACGCTGAGGGAATCACCTCGTGCAACAGCCTCAGTAGCATGGAGTTCACGTTCCCTGAGTCACGACAAGACTCCCTTCTCGACCCTCCTTATCAGCACGATCTGTCAATAAGGTACCAGCTGATTCGAGTCCATTCCAGTACCCTAGGAGAAAACTGCAAATTGTTGGAGATGTTTGACGACACAAAAATAATTTTATTTTGTGTGGATTTAACAGACTACGATGAATTTGACGAGGATGATAACGGAGTTCTAACGAACCGAATGATCGCAAGCAAGCAACTGTTTGAAAGCATTGTGACACATCAAGCCTCAAGAGGAAAGAACTTCCTTCTCATACTGAACAAGTTTGATCTCTTCGAAGAAAAGATCATCCACGCTCCTCTTGCTCAATGTGAGTGGTTTGTTGACTTCAATCCAATGATCACTGGAAGAAGTAGCAGCAGCACGAACCCGACATTGGCACAACGAGCGTTTCAGTACATAGCAGTGAAATTCAAGAGACTGTTTTGTTCTTTGACAGATAAAAAGTTGTTTGTTTCACAAACAACAGGGATGGAGCCCGAAAATGTGAATGCTGCTTTGAGATATGCAAGGGAAATAATCAAATGGCAAGTTGACAAACCTAACATCAGCATTACTGAAATTTCATGTACTAGTGTTGATGCAAGCAGCTTCACATAG 2694 41.8 MAGILKKLFHEKPSSPVNHVDFTGEYSFAMEYKGPGISYEIPRAVPINVDYIPTASVVLSSSQFSDDLSSLPVIQPIVKKLKKGSSSSPNSVISSTSEIQEDGVVCLHANKEDKCNIDSCDGVESSGELENFNELKGRIGGVESLEIKNEEDFQGYTNSSDSESVESGLSSSSGIFAVREEEEVDYETTRRHGRRPSAVTFLDPHTSNTISEEAESSQFEGESIQEMPRAERKGKKGSCYFCLKGNRFTEKEVCIVCGAKYCFDCIIRAMGAMPEGRKCISCIGYRIDESRRENLGKSSKVLKRLLSDYEIKSAMLHEKECEINQLPARLIYVNGDPLSRQELLTLRSCRKPPKNLKPGQYWYDKESGFWGKEGHGPSQIVSSQLEVGGRIKRNASNGNTNVCINNREITKNELRILKLAGVPCEGRPSFWVSADGSYQEEGMNNGGKIWDKTRTRLACALYSLPIPSNSVRTGEEIEDGAKSVSYEQKVLHKLLLVGHKKSGTSTIFKQAKQIYKVPFSDDERQTIKLLIQRNLYWYLTILLEGRERFEEEILMDEKNKQPVNDPSSSSASGNENQLERKDIYSLGPKLKGFADLLLQVVVSGNFDTIFPAATRVYGQLVEELLKDEAFQATYSRRNELEMLPRVATYFLDRAIDISSIEYDPSDNDILYAEGITSCNSLSSMEFTFPESRQDSLLDPPYQHDLSIRYQLIRVHSSTLGENCKLLEMFDDTKIILFCVDLTDYDEFDEDDNGVLTNRMIASKQLFESIVTHQASRGKNFLLILNKFDLFEEKIIHAPLAQCEWFVDFNPMITGRSSSSTNPTLAQRAFQYIAVKFKRLFCSLTDKKLFVSQTTGMEPENVNAALRYAREIIKWQVDKPNISITEISCTSVDASSFT* 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11964209 11970288 - CsaV3_2G014330.1 Csa02g01217 519274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01217 897 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 16 895 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa02g01217 897 CDD G-alpha 492 875 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa02g01217 897 Gene3D - 671 878 IPR027417 -
Csa02g01217 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 875 IPR027417 -
Csa02g01217 897 MobiDBLite consensus disorder prediction 184 223 - -
Csa02g01217 897 MobiDBLite consensus disorder prediction 561 577 - -
Csa02g01217 897 Gene3D - 520 670 IPR011025 GO:0007165
Csa02g01217 897 Pfam G-protein alpha subunit 488 872 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa02g01217 897 MobiDBLite consensus disorder prediction 201 223 - -
Csa02g01217 897 MobiDBLite consensus disorder prediction 184 198 - -
Csa02g01217 897 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 16 895 - -
Csa02g01217 897 SMART galpha_1 471 881 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa02g01217 897 ProSiteProfiles G-alpha domain profile. 490 884 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa02g01217 897 MobiDBLite consensus disorder prediction 152 172 - -
Csa02g01217 897 SUPERFAMILY Transducin (alpha subunit), insertion domain 519 673 IPR011025 GO:0007165
Csa02g01217 897 MobiDBLite consensus disorder prediction 557 577 - -
Csa02g01217 897 PRINTS Alpha G protein (transducin) signature 493 508 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa02g01217 897 PRINTS Alpha G protein (transducin) signature 662 684 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa02g01217 897 PRINTS Alpha G protein (transducin) signature 732 760 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa02g01217 897 PRINTS Alpha G protein (transducin) signature 780 789 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01217 - - - csv:101202880 1727.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01217 Csa-Chr2:11964209 Csa03g00126 Csa-Chr3:980855 0 dispersed
Csa01g00477 Csa-Chr1:3025634 Csa02g01217 Csa-Chr2:11964209 2.08E-06 transposed
Csa02g01217 Csa-Chr2:11964209 Csa06g02894 Csa-Chr6:25157032 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01217 Csa_Chr02 FPKM 272.505707 291.070801 1.671453 1.633946 20.633211 22.12698 19.516953 61.168167 62.665497 56.223606