Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01220 ATGCCGACCTCCCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCCTCTCCCTCTCCTTCTCCTTCCACCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCAATTTCCCTCCTCCTTCATCCTTACAGCCGGCGAAGCTCCCAGTCGACTTCAGTCCCCCTCTAATAGCCATGGTTGTCGTCATCGCTACTGCCTTTCTCATCGTCACTTACTCTCGCCTAATCTCTCGCCATCTCATCCCTCCCATTCTCCATCTCCTCCGTCTCCACCGCCGTCGCTGGCGCAGGTGGCGCCGCCGTCGTCGACTTGCTGCCCGATCTTACATCCCGTCCTCCTCTGGCGGCGACTTGGATTCACTCCCTTACGATTCGCCTTTCTTCGAACCTACTACAGATGCCTTCCATGTATTCTCTCCGTACGGTCTGGACGAATCTGTAATCAAAACGATTCCGCTTTCCGTCTACACTGCCAAAAGCCGTGACCGTGAGTGCGCCGTTTGTCTTTTGGAATTTGAAGACGATGATTACGTTAGAACGCTACCGATTTGTTCGCACGCCTTTCATGTTGATTGTATTGATGTATGGCTTAGATCACACGCGAACTGTCCTCTCTGTCGCGCGGTGGTTTTTAGGCCGGAATCTCCATTCACGCCGGTTATGGCAGCTAGAATCCGGCCAAGCTTAGACGATACCATCTTACGAAGCATCATATTGGAACCGTTAGCTGAAGGTCCTCCTATACCTAATCGAGATTCTTACCACGCAACGGAATCAGAGATCACGCCTTGTATTGATGAGCCACGAAATAGTAATTCAGTGGAGGATCAAATGAACGGAAGAGATTTTTTGTTGAAACGATCGTATTCATTCGGATTCGAACGGAGCTTAGCGTCGGAGAGAATGATTCTAGAACCAGCAACCACGTCTCCATGGAGGTACCGTCGTGGAAGCTTCTGGAGCAAACGGCCGTCACCATTCGGATCTCTACCGAAAGCGAGAGTATTCTCATTCCGATACTACAGAGGTATGAAGTCCCCGTTCTTCAGACGAAGAGGAGGATTCTTTCCGTTATCGGAATCAAGCTGGAGATTCTCCAACGGCGTAGGTGGAGGTTCATCGAGACGGAGTAAGTCAATGACGAGTCCAATGTTTCTCCGATCGTCAGTAACAGGCGGAGGAGGAGCAGCGGCGTTTTCGTCGAGCCGGTTGAGATGCGGAGATCCCGAGGCGTTATTATCACCGGAGAGATTCAATAGAAGATGA 1266 51.82 MPTSPSPSPSPSPSPSPSPSPSTSSSSSSSSAAAANFPPPSSLQPAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLLRLHRRRWRRWRRRRRLAARSYIPSSSGGDLDSLPYDSPFFEPTTDAFHVFSPYGLDESVIKTIPLSVYTAKSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILRSIILEPLAEGPPIPNRDSYHATESEITPCIDEPRNSNSVEDQMNGRDFLLKRSYSFGFERSLASERMILEPATTSPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVTGGGGAAAFSSSRLRCGDPEALLSPERFNRR* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11996229 11999217 - CsaV3_2G014360.1 Csa02g01220 519277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01220 421 MobiDBLite consensus disorder prediction 1 40 - -
Csa02g01220 421 SUPERFAMILY RING/U-box 161 213 - -
Csa02g01220 421 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 391 IPR044675 -
Csa02g01220 421 MobiDBLite consensus disorder prediction 1 20 - -
Csa02g01220 421 CDD RING-H2_PA-TM-RING 164 207 - -
Csa02g01220 421 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
Csa02g01220 421 Pfam Ring finger domain 164 207 IPR001841 -
Csa02g01220 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 211 IPR013083 -
Csa02g01220 421 SMART ring_2 165 206 IPR001841 -
Csa02g01220 421 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 391 - -
Csa02g01220 421 MobiDBLite consensus disorder prediction 21 38 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01220 Csa-Chr2:11996229 Csa03g04600 Csa-Chr3:40005483 6.65E-27 dispersed
Csa02g01220 Csa-Chr2:11996229 Csa06g03136 Csa-Chr6:26772192 1.48E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01220 - K19041 csv:101206300 698.738