Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01229 ATGGACGACTGTATTAGCAGCGATGAGGACTATTATGACTCCGATCGAGATTCTCTTCATGGTCTTGAGAACGAGGACTCTGAAATTCAGCGGGTTCCTAAAACTCCCTCTACTAAGGTTATTACGAAAGAATCTCTCCTTGCGGCACAGAAGGAGGACATGCGTAGAGTTATGGACTTGCTATCGTTGAGGGAATACCATGCTCGGACATTACTTATTCATTACCGATGGGATGTTGAGAAATTGTTTGCTGTACTTGTGGAGAAAGGGAAAAATCACTTGTTTGCTACAGCTGGTGTTACTATGATTGAGAATCGAAGCAATACTTCCTCTGAGGCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACGAGAGTGGATTGTGGTCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGGCAAAGTCGGAGAATCAGATGCATGGCCCACAAATGCAATGCAATTTGTGATGAAGCTGTTGTTAGGACTCTAGTTAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCATACATTGAGGACAACAAAAGAGTCAAGTGGTGTCCAAGTACCCCTCATTGCGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGCTCGTGTGGTCTTCAATTTTGTTTCAGTTGCTTATCTGAGGCTCACTCACCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCAGAGATGAATCTGAAACTGTTAACTGGATTACAGTACATACAAAGCCCTGCCCAAAGTGCCATAAACCCGTCGAAAAGAATGGAGGTTGTAACCTCGTCAGCTGCATCTGTGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCTACGGGTCGTGAGCATACTTGGTCAAGCATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAAAAAGCTGAGCGAGCAAAACGGGATTTGTATCGGTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAGTTGAAGGAATCTATACAAGAGAAGATCTCGATTTCAGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTCTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCATTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACTGAGGCGGAAAGGGAGATAAAGCAGCATCTATTTGAGGACCAGCAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAAGAGCCGTTCGATCAATATACTAAAGATAAGGTAATGGAGATACGCATGCAAGTCATCAATCTGTCAGTTATCACCGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCGAAGGGCATCGAGAAGGCACTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTTCAGATAAATATCCGCCATCTGACTGTGGTACAAGTGGAGGATTGTCGGAATGTGAACGACTGACTAGCTTGAATTCCGAGGAGAACGGATGCTCTTCTAGGAAACGTGCCAGAGCAGAAGTTGTTGCTGGCAACTTTTTTGATCTTAACTTGCCTGCTGAGGTTGTTGATAGAAACTGA 1770 42.6 MDDCISSDEDYYDSDRDSLHGLENEDSEIQRVPKTPSTKVITKESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKNHLFATAGVTMIENRSNTSSEASSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRTLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEAEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTSDKYPPSDCGTSGGLSECERLTSLNSEENGCSSRKRARAEVVAGNFFDLNLPAEVVDRN* 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12038038 12042565 + CsaV3_2G014450.1 Csa02g01229 519286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01229 589 SMART ibrneu5 260 325 IPR002867 -
Csa02g01229 589 SMART ibrneu5 190 252 IPR002867 -
Csa02g01229 589 Pfam Ariadne domain 329 589 IPR045840 -
Csa02g01229 589 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Csa02g01229 589 Gene3D - 248 496 - -
Csa02g01229 589 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 516 - -
Csa02g01229 589 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 -
Csa02g01229 589 MobiDBLite consensus disorder prediction 1 28 - -
Csa02g01229 589 SUPERFAMILY RING/U-box 191 259 - -
Csa02g01229 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 204 IPR013083 -
Csa02g01229 589 SUPERFAMILY RING/U-box 114 202 - -
Csa02g01229 589 SUPERFAMILY RING/U-box 260 325 - -
Csa02g01229 589 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Csa02g01229 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 516 IPR031127 GO:0004842|GO:0016567
Csa02g01229 589 MobiDBLite consensus disorder prediction 11 28 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01229 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101205066 1189.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01229 Csa-Chr2:12038038 Csa06g00382 Csa-Chr6:3180847 1.60E-60 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g01229 . 164 590 ARIADNE family AT4G34370 72.5 5.7e-184 640.6
Csa02g01229 . 58 542 ARIADNE family AT2G16090 77.4 1.5e-225 778.9
Csa02g01229 . 28 543 ARIADNE family AT3G27710 61.9 9.9e-186 646.7
Csa02g01229 . 44 522 ARIADNE family AT3G27720 54.5 5.1e-144 508.1
Csa02g00815 . 1 542 ARIADNE family AT1G05890 63.2 8.3e-218 753.4
Csa06g00382 . 61 529 ARIADNE family AT1G05890 72.7 5.6e-214 740.7
Csa02g00815 . 20 546 ARIADNE family AT1G65430 76.7 3.0e-249 857.8
Csa06g00382 . 16 588 ARIADNE family AT1G65430 67.5 8.2e-239 823.2
Csa02g00815 . 9 460 ARIADNE family AT2G31780 53.4 1.5e-147 519.6
Csa06g00382 . 57 454 ARIADNE family AT2G31780 57.3 4.7e-141 498.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01229 Csa_Chr02 FPKM 1.213186 1.52564 3.822361 4.541191 5.87515 5.661004 5.337189 6.138188 6.303033 6.613204