Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01243 ATGGTAGTAGCTTCACCTTTTACTGCATCTCTCAGTTTCTCTGTCGCTTCGAACAATCGAGCCTCATCCATTTCTCAACTTTCTCGAAGAAATTCACACAGGTCCATAGTCTCTGCTTTCCCGAGGCCTTATGGCGACTCCTCCACAATTGGATTATCGAGTAAAACAAATGGGGCACCTTTAAATCTTGACGATAAAGACTTTCTTCGCACCAGTACAAGTTATGAACCTATAGTGGCTAGGAGAGATAATCCACCCGTTATGCCTGCTGTGATGACACCAGGAGGGCCATTGGATCTCTCTTCTGTGTTATTTAGGAACCGTATTATATTTATTGGTCAACCTATCAACTCAACCGTGGCACAACGAGTTATATCACAGCTTGTGACTCTAGCAACAATTGATGAGGATGCAGATATTCTGGTATATCTGAATTGCCCTGGTGGAAGTACATACTCAATATTAGCAATTTATGACTGTATGTCTTGGATAAAGCCTAAGGTTGGTACAGTGTGCTTCGGAATTGTTGCAAGTCAAGGGGCTCTTCTTCTTGCAGGTGGAGAAAAGGGAATGCGCTATGCTATGCCAAATTCTCGAATTATGATTCATCAGCCACAAAGTGGATGTGGGGGTGATGTGGAGGATGTTAGACGTCAAGTCAATGAAGCAGTTCAATCACGCAATAAAATTGAAAAGATGTATGCTGCATTTACTGGCCAATCTATAGAGACAATACAACAATACATTGATAGGGATCGATTTTTGTCAGTTTCCGAGGCTTTAGATTTTGGGCTTATTGACGGTGTGCTGGAAACAGAATACTGA 825 42.06 MVVASPFTASLSFSVASNNRASSISQLSRRNSHRSIVSAFPRPYGDSSTIGLSSKTNGAPLNLDDKDFLRTSTSYEPIVARRDNPPVMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSTVAQRVISQLVTLATIDEDADILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGIVASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGDVEDVRRQVNEAVQSRNKIEKMYAAFTGQSIETIQQYIDRDRFLSVSEALDFGLIDGVLETEY* 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12178556 12183454 + CsaV3_2G014590.1 Csa02g01243 519300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01243 274 CDD S14_ClpP_2 99 269 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa02g01243 274 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 13 274 - -
Csa02g01243 274 ProSitePatterns Endopeptidase Clp histidine active site. 192 205 IPR033135 -
Csa02g01243 274 PRINTS Clp protease catalytic subunit P signature 99 114 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa02g01243 274 PRINTS Clp protease catalytic subunit P signature 139 159 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa02g01243 274 PRINTS Clp protease catalytic subunit P signature 170 187 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa02g01243 274 PRINTS Clp protease catalytic subunit P signature 191 210 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa02g01243 274 PRINTS Clp protease catalytic subunit P signature 248 267 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa02g01243 274 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 87 273 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa02g01243 274 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 13 274 IPR023562 -
Csa02g01243 274 Pfam Clp protease 99 272 IPR023562 -
Csa02g01243 274 Coils Coil 213 233 - -
Csa02g01243 274 Gene3D - 79 274 - -
Csa02g01243 274 SUPERFAMILY ClpP/crotonase 98 272 IPR029045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01243 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101213940 539.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01243 Csa-Chr2:12178556 Csa04g00127 Csa-Chr4:730156 3.47E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g569 . . . Bda08g00901 . . Bma05g00475 . . . Cma02g00409 . Car02g00268 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00353 . Chy11g00395 . . . . . . . . . . Cmo02g00413 . . . . . . Cpe05g01249 Bhi10g02028 Tan05g1325 Cmetu11g1874 . Hepe08g1028 . . . . . . . . . . Csa02g01243 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011349 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01243 Csa_Chr02 FPKM 5.518868 6.227739 0.629077 0.645975 5.148127 5.132033 4.606496 0.0 0.0 0.0